miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18098 3' -62.2 NC_004680.1 + 37887 0.66 0.405937
Target:  5'- cAUgACUGCCGCCGAggaUGCGuACCGGcGUg -3'
miRNA:   3'- -UGgUGGCGGUGGCUg--GCGU-UGGCC-CA- -5'
18098 3' -62.2 NC_004680.1 + 51737 0.66 0.405937
Target:  5'- uGCCGCUGCUG-CGGuuGUAGCCGaGGg -3'
miRNA:   3'- -UGGUGGCGGUgGCUggCGUUGGC-CCa -5'
18098 3' -62.2 NC_004680.1 + 7613 0.66 0.405937
Target:  5'- aGCCauugACCGgCACCGACUGgAgcGCCGGcGg -3'
miRNA:   3'- -UGG----UGGCgGUGGCUGGCgU--UGGCC-Ca -5'
18098 3' -62.2 NC_004680.1 + 18037 0.66 0.397219
Target:  5'- uACCAUCGCCGCUGcgagaaUGCGA-CGGGUc -3'
miRNA:   3'- -UGGUGGCGGUGGCug----GCGUUgGCCCA- -5'
18098 3' -62.2 NC_004680.1 + 19599 0.66 0.397219
Target:  5'- uACCACCGgCGgCG-CCGuCAcCCGGGc -3'
miRNA:   3'- -UGGUGGCgGUgGCuGGC-GUuGGCCCa -5'
18098 3' -62.2 NC_004680.1 + 47920 0.66 0.397219
Target:  5'- aACCGCCGCagccaGCCGGcgcuccaacuCCGCGucaCGGGc -3'
miRNA:   3'- -UGGUGGCGg----UGGCU----------GGCGUug-GCCCa -5'
18098 3' -62.2 NC_004680.1 + 44954 0.66 0.388622
Target:  5'- cUCACCGUcgCACCGACgGUgGAUCGGGa -3'
miRNA:   3'- uGGUGGCG--GUGGCUGgCG-UUGGCCCa -5'
18098 3' -62.2 NC_004680.1 + 40914 0.66 0.380149
Target:  5'- -aUACCGUCGgCGAcCCGCAcACCGuGGUa -3'
miRNA:   3'- ugGUGGCGGUgGCU-GGCGU-UGGC-CCA- -5'
18098 3' -62.2 NC_004680.1 + 2945 0.66 0.380149
Target:  5'- cACCACCaCCGgCGGCgGCgAACCGGu- -3'
miRNA:   3'- -UGGUGGcGGUgGCUGgCG-UUGGCCca -5'
18098 3' -62.2 NC_004680.1 + 42829 0.66 0.3718
Target:  5'- aGCgCACUGCCGgCGgucccaGCCaCGACCGGGg -3'
miRNA:   3'- -UG-GUGGCGGUgGC------UGGcGUUGGCCCa -5'
18098 3' -62.2 NC_004680.1 + 27343 0.66 0.3718
Target:  5'- gUCGCCGCCGCCG-CCuuc-CUGGGUg -3'
miRNA:   3'- uGGUGGCGGUGGCuGGcguuGGCCCA- -5'
18098 3' -62.2 NC_004680.1 + 21231 0.67 0.366851
Target:  5'- cGCCAcCCGCacccaaaugcggguaUACC--CCGCGGCCGGGg -3'
miRNA:   3'- -UGGU-GGCG---------------GUGGcuGGCGUUGGCCCa -5'
18098 3' -62.2 NC_004680.1 + 42765 0.67 0.363577
Target:  5'- cCCACCGUCGCCG-CgGCAuCCGuGUa -3'
miRNA:   3'- uGGUGGCGGUGGCuGgCGUuGGCcCA- -5'
18098 3' -62.2 NC_004680.1 + 34558 0.67 0.345934
Target:  5'- gUCugCGCCGCCcauguuguggguGCCGUcGCCGGGg -3'
miRNA:   3'- uGGugGCGGUGGc-----------UGGCGuUGGCCCa -5'
18098 3' -62.2 NC_004680.1 + 21865 0.67 0.342792
Target:  5'- uUCACCGCCAugccagcccacuuauUCGGCCGCGA-CGaGGUg -3'
miRNA:   3'- uGGUGGCGGU---------------GGCUGGCGUUgGC-CCA- -5'
18098 3' -62.2 NC_004680.1 + 19863 0.67 0.339672
Target:  5'- cACCACCaggGCCACCauuGCCGCcgGACUGGa- -3'
miRNA:   3'- -UGGUGG---CGGUGGc--UGGCG--UUGGCCca -5'
18098 3' -62.2 NC_004680.1 + 59218 0.67 0.339672
Target:  5'- gUCugCGCCGCCG--CGUGAUCGGGg -3'
miRNA:   3'- uGGugGCGGUGGCugGCGUUGGCCCa -5'
18098 3' -62.2 NC_004680.1 + 8893 0.67 0.339672
Target:  5'- uACgGCgGCC-CCuuGACCGCG-CCGGGa -3'
miRNA:   3'- -UGgUGgCGGuGG--CUGGCGUuGGCCCa -5'
18098 3' -62.2 NC_004680.1 + 9627 0.67 0.339672
Target:  5'- aGCUGCUGCUGCgGGCCGUAACgCuGGUg -3'
miRNA:   3'- -UGGUGGCGGUGgCUGGCGUUG-GcCCA- -5'
18098 3' -62.2 NC_004680.1 + 42215 0.67 0.339672
Target:  5'- cACCACCG-CACCGugCagcgugcccgcGCGAagaCGGGUg -3'
miRNA:   3'- -UGGUGGCgGUGGCugG-----------CGUUg--GCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.