miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18098 3' -62.2 NC_004680.1 + 19300 0.67 0.331961
Target:  5'- cACCGCgGCCACgGuguucccgguGCCG-AACUGGGUg -3'
miRNA:   3'- -UGGUGgCGGUGgC----------UGGCgUUGGCCCA- -5'
18098 3' -62.2 NC_004680.1 + 18518 0.67 0.331197
Target:  5'- cGCCGCCGCggauagcggacacCACCGugucaaucgucaACUGCAcCCGGGc -3'
miRNA:   3'- -UGGUGGCG-------------GUGGC------------UGGCGUuGGCCCa -5'
18098 3' -62.2 NC_004680.1 + 42539 0.67 0.327396
Target:  5'- -aCAUCGCCAaagaagucggaugcuCCGACCGCAcagugucaCGGGUg -3'
miRNA:   3'- ugGUGGCGGU---------------GGCUGGCGUug------GCCCA- -5'
18098 3' -62.2 NC_004680.1 + 40788 0.67 0.324379
Target:  5'- gACCGCCGUugcucuCACCGACC-CGGCCacauGGUg -3'
miRNA:   3'- -UGGUGGCG------GUGGCUGGcGUUGGc---CCA- -5'
18098 3' -62.2 NC_004680.1 + 31841 0.67 0.323628
Target:  5'- aGCCuCCGCCacACCGACCccggcugagacagGCAcCUGGGg -3'
miRNA:   3'- -UGGuGGCGG--UGGCUGG-------------CGUuGGCCCa -5'
18098 3' -62.2 NC_004680.1 + 12263 0.68 0.316928
Target:  5'- gGCUACCGCCACCGucggaacggauACCugggcgGCAgcGCCGGa- -3'
miRNA:   3'- -UGGUGGCGGUGGC-----------UGG------CGU--UGGCCca -5'
18098 3' -62.2 NC_004680.1 + 29224 0.68 0.316928
Target:  5'- gACCGCUcuaGUCGCCGaaGCCGUu-CCGGGg -3'
miRNA:   3'- -UGGUGG---CGGUGGC--UGGCGuuGGCCCa -5'
18098 3' -62.2 NC_004680.1 + 45915 0.68 0.316928
Target:  5'- uCCACCGUCACCG-CCGUcaaauACCuGGa -3'
miRNA:   3'- uGGUGGCGGUGGCuGGCGu----UGGcCCa -5'
18098 3' -62.2 NC_004680.1 + 24821 0.68 0.316928
Target:  5'- gACUACCGCCaAUgGAuCUGCGggaggcGCCGGGg -3'
miRNA:   3'- -UGGUGGCGG-UGgCU-GGCGU------UGGCCCa -5'
18098 3' -62.2 NC_004680.1 + 1957 0.68 0.314717
Target:  5'- uGCCGCCGCCACCaACaGCccacuccacaacccGAuCCGGGa -3'
miRNA:   3'- -UGGUGGCGGUGGcUGgCG--------------UU-GGCCCa -5'
18098 3' -62.2 NC_004680.1 + 37166 0.68 0.309605
Target:  5'- uGCCGCgaggaCGCCAaccuggCGGCUGcCAGCCGGGa -3'
miRNA:   3'- -UGGUG-----GCGGUg-----GCUGGC-GUUGGCCCa -5'
18098 3' -62.2 NC_004680.1 + 26463 0.68 0.302413
Target:  5'- gACCGCuCGCCgacaggaucGCUGACCGCAucGCCGacaGGa -3'
miRNA:   3'- -UGGUG-GCGG---------UGGCUGGCGU--UGGC---CCa -5'
18098 3' -62.2 NC_004680.1 + 41315 0.68 0.302413
Target:  5'- --uGCCGCUGCUGAUCGCcGCCGGc- -3'
miRNA:   3'- uggUGGCGGUGGCUGGCGuUGGCCca -5'
18098 3' -62.2 NC_004680.1 + 48894 0.68 0.302413
Target:  5'- cGCCugCGCCACCacuuuCCGauGCUGGGa -3'
miRNA:   3'- -UGGugGCGGUGGcu---GGCguUGGCCCa -5'
18098 3' -62.2 NC_004680.1 + 25633 0.68 0.302413
Target:  5'- cCCGCCGUCGCCGacGCCGCAcCCa--- -3'
miRNA:   3'- uGGUGGCGGUGGC--UGGCGUuGGccca -5'
18098 3' -62.2 NC_004680.1 + 10220 0.68 0.295349
Target:  5'- aAUCGCCGCCACCGGCaagGuCAGCauGGa -3'
miRNA:   3'- -UGGUGGCGGUGGCUGg--C-GUUGgcCCa -5'
18098 3' -62.2 NC_004680.1 + 12654 0.68 0.288415
Target:  5'- aGCgCACCGCCGCCGuccauGCCGaucccACCGGa- -3'
miRNA:   3'- -UG-GUGGCGGUGGC-----UGGCgu---UGGCCca -5'
18098 3' -62.2 NC_004680.1 + 21475 0.68 0.288415
Target:  5'- uGCuCGCCagaugaggGCCACCGGCCcgGGCUGGGUg -3'
miRNA:   3'- -UG-GUGG--------CGGUGGCUGGcgUUGGCCCA- -5'
18098 3' -62.2 NC_004680.1 + 41742 0.68 0.28161
Target:  5'- cACCGCCGaccCCGCCcGCCGCAucuGCUGGa- -3'
miRNA:   3'- -UGGUGGC---GGUGGcUGGCGU---UGGCCca -5'
18098 3' -62.2 NC_004680.1 + 12726 0.68 0.274932
Target:  5'- gUCugCGCgGCCuGACCaGCG-CCGGGUg -3'
miRNA:   3'- uGGugGCGgUGG-CUGG-CGUuGGCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.