miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18098 5' -56.2 NC_004680.1 + 26174 0.66 0.731904
Target:  5'- cCAgCCGG--CGGgGCCGcGGGACugCa -3'
miRNA:   3'- aGUgGGUCaaGCCgUGGC-CCUUGugG- -5'
18098 5' -56.2 NC_004680.1 + 28762 0.66 0.731904
Target:  5'- gUCGCCgGGUUCGGUGCaGGcGuacaaguCGCCu -3'
miRNA:   3'- -AGUGGgUCAAGCCGUGgCC-Cuu-----GUGG- -5'
18098 5' -56.2 NC_004680.1 + 20528 0.66 0.731904
Target:  5'- -gGCCCAucGUgaucgCGGUGCCGuucGGGAUGCCu -3'
miRNA:   3'- agUGGGU--CAa----GCCGUGGC---CCUUGUGG- -5'
18098 5' -56.2 NC_004680.1 + 57674 0.66 0.7215
Target:  5'- aUCGagUCUuGUUCGGUgauggccaugaACCGGGAgaacgGCACCa -3'
miRNA:   3'- -AGU--GGGuCAAGCCG-----------UGGCCCU-----UGUGG- -5'
18098 5' -56.2 NC_004680.1 + 6735 0.66 0.7215
Target:  5'- gCGCCgGGUUUGGUGgCGG-AGCugCg -3'
miRNA:   3'- aGUGGgUCAAGCCGUgGCCcUUGugG- -5'
18098 5' -56.2 NC_004680.1 + 28486 0.66 0.720455
Target:  5'- cCAgCCAGggCaGCGCCGuGGGuuucgaugcguucACGCCa -3'
miRNA:   3'- aGUgGGUCaaGcCGUGGC-CCU-------------UGUGG- -5'
18098 5' -56.2 NC_004680.1 + 15720 0.66 0.711011
Target:  5'- uUCGCCCAccugUCaGGCugCGGau-CACCu -3'
miRNA:   3'- -AGUGGGUca--AG-CCGugGCCcuuGUGG- -5'
18098 5' -56.2 NC_004680.1 + 23672 0.66 0.711011
Target:  5'- gCGCCCGcaaaccccUCGGCACCaGGcacGAAUACCc -3'
miRNA:   3'- aGUGGGUca------AGCCGUGG-CC---CUUGUGG- -5'
18098 5' -56.2 NC_004680.1 + 57259 0.66 0.708904
Target:  5'- uUCugCUcGUgggcguucucggCGGCGCCGGGGAauccguGCCa -3'
miRNA:   3'- -AGugGGuCAa-----------GCCGUGGCCCUUg-----UGG- -5'
18098 5' -56.2 NC_004680.1 + 23167 0.66 0.700446
Target:  5'- uUCGcCCCGGUcgugccagCGGCGCCaGuGuGAACACUg -3'
miRNA:   3'- -AGU-GGGUCAa-------GCCGUGG-C-C-CUUGUGG- -5'
18098 5' -56.2 NC_004680.1 + 7698 0.66 0.700446
Target:  5'- gCGCuCCAG-UCGGUGCCGGucaauGGCugCg -3'
miRNA:   3'- aGUG-GGUCaAGCCGUGGCCc----UUGugG- -5'
18098 5' -56.2 NC_004680.1 + 861 0.66 0.700446
Target:  5'- -gGCgCCGGUUCGGUgugaCGGGuuuGACGCUg -3'
miRNA:   3'- agUG-GGUCAAGCCGug--GCCC---UUGUGG- -5'
18098 5' -56.2 NC_004680.1 + 14828 0.66 0.700446
Target:  5'- cUCACCgAGguaUCGG-GCCGGGGcuuGCCa -3'
miRNA:   3'- -AGUGGgUCa--AGCCgUGGCCCUug-UGG- -5'
18098 5' -56.2 NC_004680.1 + 31164 0.66 0.700446
Target:  5'- -gACCCAc-UCGGCACCGucguagcagacGGAgaacaGCACCc -3'
miRNA:   3'- agUGGGUcaAGCCGUGGC-----------CCU-----UGUGG- -5'
18098 5' -56.2 NC_004680.1 + 40182 0.66 0.700446
Target:  5'- cCACCaugagGGUuuagaaucUCGaucuaGCAUCGGGGACGCCu -3'
miRNA:   3'- aGUGGg----UCA--------AGC-----CGUGGCCCUUGUGG- -5'
18098 5' -56.2 NC_004680.1 + 17168 0.66 0.689818
Target:  5'- cCGCCaaucGaaCGGCugcGCCGGGAucgACACCu -3'
miRNA:   3'- aGUGGgu--CaaGCCG---UGGCCCU---UGUGG- -5'
18098 5' -56.2 NC_004680.1 + 17529 0.67 0.668413
Target:  5'- aUACCCGGcucagaCGGCACCGcauGAGC-CCa -3'
miRNA:   3'- aGUGGGUCaa----GCCGUGGCc--CUUGuGG- -5'
18098 5' -56.2 NC_004680.1 + 29960 0.67 0.668413
Target:  5'- cCACCaguauuGUUCGGUgauuCCGGGGA-GCCg -3'
miRNA:   3'- aGUGGgu----CAAGCCGu---GGCCCUUgUGG- -5'
18098 5' -56.2 NC_004680.1 + 10938 0.67 0.658733
Target:  5'- uUC-CCCGGUUgGGUuccgcuacuuccguuCUGGGAAgACCg -3'
miRNA:   3'- -AGuGGGUCAAgCCGu--------------GGCCCUUgUGG- -5'
18098 5' -56.2 NC_004680.1 + 11251 0.67 0.657656
Target:  5'- aCGCgCCAGgaggCGGCAgaaUCGGGu-CACCc -3'
miRNA:   3'- aGUG-GGUCaa--GCCGU---GGCCCuuGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.