miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18098 5' -56.2 NC_004680.1 + 39770 0.68 0.603721
Target:  5'- gCGCCgCAGgga-GCGCCGcauGGAGCGCCg -3'
miRNA:   3'- aGUGG-GUCaagcCGUGGC---CCUUGUGG- -5'
18098 5' -56.2 NC_004680.1 + 6517 0.69 0.508732
Target:  5'- uUC-CCCAGUUCGGUuCUGGGGuguCuguuCCg -3'
miRNA:   3'- -AGuGGGUCAAGCCGuGGCCCUu--Gu---GG- -5'
18098 5' -56.2 NC_004680.1 + 39722 0.69 0.539841
Target:  5'- gCGCCgCAGa--GaGCGCCgcaGGGAGCGCCg -3'
miRNA:   3'- aGUGG-GUCaagC-CGUGG---CCCUUGUGG- -5'
18098 5' -56.2 NC_004680.1 + 24836 0.69 0.539841
Target:  5'- aUCugCgGGa--GGCGCCGGGGACuACa -3'
miRNA:   3'- -AGugGgUCaagCCGUGGCCCUUG-UGg -5'
18098 5' -56.2 NC_004680.1 + 19589 0.69 0.550357
Target:  5'- gUCGCUgAGggCGGCG-CGGcGggUACCg -3'
miRNA:   3'- -AGUGGgUCaaGCCGUgGCC-CuuGUGG- -5'
18098 5' -56.2 NC_004680.1 + 11767 0.68 0.581178
Target:  5'- gUCugCCGGUgCGGCcgguguguccaugACCGcucuccccGGGGCGCCg -3'
miRNA:   3'- -AGugGGUCAaGCCG-------------UGGC--------CCUUGUGG- -5'
18098 5' -56.2 NC_004680.1 + 57579 0.68 0.586532
Target:  5'- uUCuCCCGGUUCauGGCcaucaccgaacAagacucgaucgccguCCGGGAACACCg -3'
miRNA:   3'- -AGuGGGUCAAG--CCG-----------U---------------GGCCCUUGUGG- -5'
18098 5' -56.2 NC_004680.1 + 39590 0.68 0.603721
Target:  5'- gCGCCgCAGgga-GCGCCGcauGGAGCGCCg -3'
miRNA:   3'- aGUGG-GUCaagcCGUGGC---CCUUGUGG- -5'
18098 5' -56.2 NC_004680.1 + 39686 0.68 0.603721
Target:  5'- gCGCCgCAGgga-GCGCCGcauGGAGCGCCg -3'
miRNA:   3'- aGUGG-GUCaagcCGUGGC---CCUUGUGG- -5'
18098 5' -56.2 NC_004680.1 + 39806 0.69 0.508732
Target:  5'- gCGCCgCAGgga-GCGCCgcaGGGAGCGCCg -3'
miRNA:   3'- aGUGG-GUCaagcCGUGG---CCCUUGUGG- -5'
18098 5' -56.2 NC_004680.1 + 39650 0.69 0.508732
Target:  5'- gCGCCgCAGgga-GCGCCgcaGGGAGCGCCg -3'
miRNA:   3'- aGUGG-GUCaagcCGUGG---CCCUUGUGG- -5'
18098 5' -56.2 NC_004680.1 + 43546 0.7 0.478404
Target:  5'- uUCGaCCAGggCGGC--CGGGAACGCUg -3'
miRNA:   3'- -AGUgGGUCaaGCCGugGCCCUUGUGG- -5'
18098 5' -56.2 NC_004680.1 + 27259 0.74 0.261737
Target:  5'- aCACCCAGgaaggCGGCGgCGGcGACGCUg -3'
miRNA:   3'- aGUGGGUCaa---GCCGUgGCCcUUGUGG- -5'
18098 5' -56.2 NC_004680.1 + 13407 0.74 0.268379
Target:  5'- cUCACCCAcgacauggGGCACUGGuGGGCACCg -3'
miRNA:   3'- -AGUGGGUcaag----CCGUGGCC-CUUGUGG- -5'
18098 5' -56.2 NC_004680.1 + 56302 0.73 0.318706
Target:  5'- cCACCUGGUgcgcaUGGCAuCCGGGcguuACACCa -3'
miRNA:   3'- aGUGGGUCAa----GCCGU-GGCCCu---UGUGG- -5'
18098 5' -56.2 NC_004680.1 + 19514 0.73 0.326449
Target:  5'- -gGCCCGGgugaCGGCGCCGccgguGGuAACACCa -3'
miRNA:   3'- agUGGGUCaa--GCCGUGGC-----CC-UUGUGG- -5'
18098 5' -56.2 NC_004680.1 + 46364 0.72 0.384501
Target:  5'- -gGCCCGGg-CGGUGCUGGuAACACCg -3'
miRNA:   3'- agUGGGUCaaGCCGUGGCCcUUGUGG- -5'
18098 5' -56.2 NC_004680.1 + 7611 0.71 0.429949
Target:  5'- gCAgCCAuuGacCGGCACCGacuGGAGCGCCg -3'
miRNA:   3'- aGUgGGU--CaaGCCGUGGC---CCUUGUGG- -5'
18098 5' -56.2 NC_004680.1 + 44233 0.71 0.429949
Target:  5'- -gGCCUAG--CGGCAgCGGGAaaaccuACACCg -3'
miRNA:   3'- agUGGGUCaaGCCGUgGCCCU------UGUGG- -5'
18098 5' -56.2 NC_004680.1 + 28216 0.7 0.448992
Target:  5'- aUCACCguGUgCGGCACCGGuguucccuggugGAucggccccgACGCCg -3'
miRNA:   3'- -AGUGGguCAaGCCGUGGCC------------CU---------UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.