miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18099 3' -60.7 NC_004680.1 + 19459 0.66 0.449168
Target:  5'- uACCCaaGGCCcaGCCcugcGCACCACCAcCACc -3'
miRNA:   3'- -UGGGc-CCGG--UGGu---UGUGGUGGUcGUG- -5'
18099 3' -60.7 NC_004680.1 + 44489 0.66 0.449168
Target:  5'- cCCCGccaGCCGCCAACcCCAgCAGUuccACg -3'
miRNA:   3'- uGGGCc--CGGUGGUUGuGGUgGUCG---UG- -5'
18099 3' -60.7 NC_004680.1 + 18475 0.66 0.449168
Target:  5'- cACCCGGGCCAaCAAgguUugCAaaaucuCCGGCAa -3'
miRNA:   3'- -UGGGCCCGGUgGUU---GugGU------GGUCGUg -5'
18099 3' -60.7 NC_004680.1 + 11824 0.66 0.449168
Target:  5'- cCCCGGGCaguCGCC-GCGCgACUucGCGCa -3'
miRNA:   3'- uGGGCCCG---GUGGuUGUGgUGGu-CGUG- -5'
18099 3' -60.7 NC_004680.1 + 24848 0.66 0.449168
Target:  5'- cGCCgGGGaCUA-CAACGCUGCgGGCGCc -3'
miRNA:   3'- -UGGgCCC-GGUgGUUGUGGUGgUCGUG- -5'
18099 3' -60.7 NC_004680.1 + 25234 0.66 0.449168
Target:  5'- gUUCGGGUCACCAGCGgCGCggaguUGGUACa -3'
miRNA:   3'- uGGGCCCGGUGGUUGUgGUG-----GUCGUG- -5'
18099 3' -60.7 NC_004680.1 + 32217 0.66 0.448215
Target:  5'- uCCCGGacagaaCCACCAGCagccuugGCCGCgaccaCAGCACg -3'
miRNA:   3'- uGGGCCc-----GGUGGUUG-------UGGUG-----GUCGUG- -5'
18099 3' -60.7 NC_004680.1 + 40928 0.66 0.439691
Target:  5'- cCCCGaGGCCcCCGAUugggACCcggACUGGCGCg -3'
miRNA:   3'- uGGGC-CCGGuGGUUG----UGG---UGGUCGUG- -5'
18099 3' -60.7 NC_004680.1 + 20747 0.66 0.439691
Target:  5'- gGCCgaUGGGCCGggUCAACaAUCuCCAGCACc -3'
miRNA:   3'- -UGG--GCCCGGU--GGUUG-UGGuGGUCGUG- -5'
18099 3' -60.7 NC_004680.1 + 42853 0.66 0.439691
Target:  5'- cAUgCGGGCgAUCAcuCGCCAUuCAGCGCa -3'
miRNA:   3'- -UGgGCCCGgUGGUu-GUGGUG-GUCGUG- -5'
18099 3' -60.7 NC_004680.1 + 46941 0.66 0.439691
Target:  5'- --gCGGGUCACCugucCACCGCUGGCu- -3'
miRNA:   3'- uggGCCCGGUGGuu--GUGGUGGUCGug -5'
18099 3' -60.7 NC_004680.1 + 48331 0.66 0.430329
Target:  5'- --gUGGGCgACgGACAUCACC-GCGCa -3'
miRNA:   3'- uggGCCCGgUGgUUGUGGUGGuCGUG- -5'
18099 3' -60.7 NC_004680.1 + 9807 0.66 0.430329
Target:  5'- cCCCGGcCCGCCGACAC-ACCAuucGcCGCg -3'
miRNA:   3'- uGGGCCcGGUGGUUGUGgUGGU---C-GUG- -5'
18099 3' -60.7 NC_004680.1 + 44966 0.66 0.421085
Target:  5'- gUCUcGGCCGCCAGCGCUuguuuUCGGUACu -3'
miRNA:   3'- uGGGcCCGGUGGUUGUGGu----GGUCGUG- -5'
18099 3' -60.7 NC_004680.1 + 20799 0.66 0.421085
Target:  5'- aACCCGaacuuCC-UCGACGCUGCCGGCGCg -3'
miRNA:   3'- -UGGGCcc---GGuGGUUGUGGUGGUCGUG- -5'
18099 3' -60.7 NC_004680.1 + 19419 0.66 0.420167
Target:  5'- aGCCCGGuaaguUCAACGCCACCAcauggguGCGCg -3'
miRNA:   3'- -UGGGCCcggu-GGUUGUGGUGGU-------CGUG- -5'
18099 3' -60.7 NC_004680.1 + 46012 0.66 0.420167
Target:  5'- cGCCCGcacccaaGGCCGCCccguCACCGCCGaauuCACc -3'
miRNA:   3'- -UGGGC-------CCGGUGGuu--GUGGUGGUc---GUG- -5'
18099 3' -60.7 NC_004680.1 + 9313 0.66 0.411962
Target:  5'- cCCCGcgaacagcacGcGCCACC-GCGCCauugACCGGCGCg -3'
miRNA:   3'- uGGGC----------C-CGGUGGuUGUGG----UGGUCGUG- -5'
18099 3' -60.7 NC_004680.1 + 42205 0.66 0.411962
Target:  5'- -gCUGGGCUGCCAcCACCGCaccGUGCa -3'
miRNA:   3'- ugGGCCCGGUGGUuGUGGUGgu-CGUG- -5'
18099 3' -60.7 NC_004680.1 + 21412 0.66 0.402963
Target:  5'- aGCCCGcgcGGUC-CC-ACGCCACCAcCGCg -3'
miRNA:   3'- -UGGGC---CCGGuGGuUGUGGUGGUcGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.