miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18099 5' -52.7 NC_004680.1 + 55387 0.66 0.869599
Target:  5'- cGGGaagGGUu-UGGUGUUuucGUCGCCGggGu -3'
miRNA:   3'- -CCCa--CUAcuACCGCAA---CAGCGGCuuU- -5'
18099 5' -52.7 NC_004680.1 + 34518 0.66 0.852927
Target:  5'- uGGGUGGgaUGGUGGCGgUGUaggUGCCc--- -3'
miRNA:   3'- -CCCACU--ACUACCGCaACA---GCGGcuuu -5'
18099 5' -52.7 NC_004680.1 + 31919 0.66 0.835298
Target:  5'- gGGGUcGGUG-UGGCGgagGcUUGCCGAu- -3'
miRNA:   3'- -CCCA-CUACuACCGCaa-C-AGCGGCUuu -5'
18099 5' -52.7 NC_004680.1 + 22679 0.66 0.826147
Target:  5'- cGGGUgGGUGggGGCc--GUCGCCGc-- -3'
miRNA:   3'- -CCCA-CUACuaCCGcaaCAGCGGCuuu -5'
18099 5' -52.7 NC_004680.1 + 21158 0.67 0.787538
Target:  5'- uGGGUGcgGGUGGCGgaguaucUGUaucCCGGAAc -3'
miRNA:   3'- -CCCACuaCUACCGCa------ACAgc-GGCUUU- -5'
18099 5' -52.7 NC_004680.1 + 50409 0.68 0.767184
Target:  5'- aGGUGAUGAUcGGCccaguugacguaGUUGUCcCCGAu- -3'
miRNA:   3'- cCCACUACUA-CCG------------CAACAGcGGCUuu -5'
18099 5' -52.7 NC_004680.1 + 25128 0.69 0.69205
Target:  5'- aGGUGGUGGUGGCGg---UGCCa--- -3'
miRNA:   3'- cCCACUACUACCGCaacaGCGGcuuu -5'
18099 5' -52.7 NC_004680.1 + 20152 0.7 0.647534
Target:  5'- cGGGUGAUu----UGUUGUCGCCGGAGg -3'
miRNA:   3'- -CCCACUAcuaccGCAACAGCGGCUUU- -5'
18099 5' -52.7 NC_004680.1 + 25226 0.76 0.325459
Target:  5'- aGGUGGUGGUGGCGUUGgccuggcacCGCCa--- -3'
miRNA:   3'- cCCACUACUACCGCAACa--------GCGGcuuu -5'
18099 5' -52.7 NC_004680.1 + 14291 0.76 0.325459
Target:  5'- uGGGUGAcGuucGCGUUGUCGCCGGc- -3'
miRNA:   3'- -CCCACUaCuacCGCAACAGCGGCUuu -5'
18099 5' -52.7 NC_004680.1 + 42487 0.82 0.134284
Target:  5'- uGGGUGGUGGagcggaucgUGGCGUUGUCGUgGAAc -3'
miRNA:   3'- -CCCACUACU---------ACCGCAACAGCGgCUUu -5'
18099 5' -52.7 NC_004680.1 + 19547 1.09 0.002032
Target:  5'- aGGGUGAUGAUGGCGUUGUCGCCGAAAu -3'
miRNA:   3'- -CCCACUACUACCGCAACAGCGGCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.