Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
181 | 3' | -55.9 | AC_000007.1 | + | 5467 | 0.71 | 0.297843 |
Target: 5'- gGCGUGgcccUUgGCGCGCAGCuugcccuuggaggagGCGCCGCaCGa -3' miRNA: 3'- -UGCAU----AAgCGCGCGUUG---------------CGUGGCG-GU- -5' |
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181 | 3' | -55.9 | AC_000007.1 | + | 6336 | 1.08 | 0.000575 |
Target: 5'- cACGUAUUCGCGCGCAACGCACCGCCAu -3' miRNA: 3'- -UGCAUAAGCGCGCGUUGCGUGGCGGU- -5' |
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181 | 3' | -55.9 | AC_000007.1 | + | 6451 | 0.67 | 0.480487 |
Target: 5'- cGCGguuggCGCGUGCAccuggugcccgacgaGCGCACCaCCGu -3' miRNA: 3'- -UGCauaa-GCGCGCGU---------------UGCGUGGcGGU- -5' |
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181 | 3' | -55.9 | AC_000007.1 | + | 10517 | 0.66 | 0.574106 |
Target: 5'- cGCGacuUUcCGCGCGCcuccAC-CACCGCCGc -3' miRNA: 3'- -UGCau-AA-GCGCGCGu---UGcGUGGCGGU- -5' |
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181 | 3' | -55.9 | AC_000007.1 | + | 11282 | 0.67 | 0.465922 |
Target: 5'- aGCGUGacaCGCGCGaGGCGUACgUGCCGc -3' miRNA: 3'- -UGCAUaa-GCGCGCgUUGCGUG-GCGGU- -5' |
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181 | 3' | -55.9 | AC_000007.1 | + | 11461 | 0.7 | 0.34308 |
Target: 5'- -aGUcccgCGCGCGCAcACGUggcgGCCGCCGa -3' miRNA: 3'- ugCAuaa-GCGCGCGU-UGCG----UGGCGGU- -5' |
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181 | 3' | -55.9 | AC_000007.1 | + | 11516 | 0.68 | 0.406277 |
Target: 5'- cACGUGUgCGCGCGCGGgacuaauccCGguCCGCg- -3' miRNA: 3'- -UGCAUAaGCGCGCGUU---------GCguGGCGgu -5' |
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181 | 3' | -55.9 | AC_000007.1 | + | 12077 | 0.68 | 0.445522 |
Target: 5'- cGCGg--UCGCugaGCu-CGCGCCGCCGg -3' miRNA: 3'- -UGCauaAGCGcg-CGuuGCGUGGCGGU- -5' |
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181 | 3' | -55.9 | AC_000007.1 | + | 12250 | 0.75 | 0.153564 |
Target: 5'- gACGUugccagCGCGCGCGgguGC-CACCGCCAg -3' miRNA: 3'- -UGCAuaa---GCGCGCGU---UGcGUGGCGGU- -5' |
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181 | 3' | -55.9 | AC_000007.1 | + | 12319 | 0.67 | 0.497399 |
Target: 5'- gGCGg---UGCGgGCGGCGCugCagaGCCAg -3' miRNA: 3'- -UGCauaaGCGCgCGUUGCGugG---CGGU- -5' |
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181 | 3' | -55.9 | AC_000007.1 | + | 12539 | 0.69 | 0.360394 |
Target: 5'- uGCGUgggGUUUGCGCGCGcCGggacCACCGCUu -3' miRNA: 3'- -UGCA---UAAGCGCGCGUuGC----GUGGCGGu -5' |
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181 | 3' | -55.9 | AC_000007.1 | + | 12675 | 0.68 | 0.445522 |
Target: 5'- aGCGUGagCGCGCGCAGCaGCAggGCa- -3' miRNA: 3'- -UGCAUaaGCGCGCGUUG-CGUggCGgu -5' |
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181 | 3' | -55.9 | AC_000007.1 | + | 12731 | 0.72 | 0.245351 |
Target: 5'- uGCugcugCGCGCGCucACGCugCGCCAc -3' miRNA: 3'- -UGcauaaGCGCGCGu-UGCGugGCGGU- -5' |
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181 | 3' | -55.9 | AC_000007.1 | + | 16042 | 0.66 | 0.529794 |
Target: 5'- cGCGgugGUggaggagGCGCGCAacuacACGCccacGCCGCCAc -3' miRNA: 3'- -UGCa--UAag-----CGCGCGU-----UGCG----UGGCGGU- -5' |
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181 | 3' | -55.9 | AC_000007.1 | + | 16158 | 0.66 | 0.529794 |
Target: 5'- gGCGgaggCGCGUaGCAcguCGcCACCGCCGc -3' miRNA: 3'- -UGCauaaGCGCG-CGUu--GC-GUGGCGGU- -5' |
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181 | 3' | -55.9 | AC_000007.1 | + | 16409 | 0.7 | 0.31825 |
Target: 5'- aGCGgccugCGCGUGCccguGCGCACCcGCCc -3' miRNA: 3'- -UGCauaa-GCGCGCGu---UGCGUGG-CGGu -5' |
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181 | 3' | -55.9 | AC_000007.1 | + | 17774 | 0.72 | 0.238878 |
Target: 5'- gGCGgcggCGCGCGU--CGCACCGUCGc -3' miRNA: 3'- -UGCauaaGCGCGCGuuGCGUGGCGGU- -5' |
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181 | 3' | -55.9 | AC_000007.1 | + | 17845 | 0.68 | 0.422693 |
Target: 5'- ------cCGcCGCGCAugcgacggugcgacGCGCGCCGCCGc -3' miRNA: 3'- ugcauaaGC-GCGCGU--------------UGCGUGGCGGU- -5' |
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181 | 3' | -55.9 | AC_000007.1 | + | 18603 | 0.66 | 0.518904 |
Target: 5'- ------cCGCGCGUcccuGCGCcguGCCGCCAg -3' miRNA: 3'- ugcauaaGCGCGCGu---UGCG---UGGCGGU- -5' |
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181 | 3' | -55.9 | AC_000007.1 | + | 21634 | 0.7 | 0.34308 |
Target: 5'- gACGUGgucCGUGUGCAccagcCGCACCGCg- -3' miRNA: 3'- -UGCAUaa-GCGCGCGUu----GCGUGGCGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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