Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1810 | 3' | -56.3 | NC_001347.2 | + | 141609 | 0.66 | 0.951135 |
Target: 5'- uGGCGcCGGCGCGCCc-UGCUGGGa--- -3' miRNA: 3'- -CUGC-GCCGCGUGGuuACGGCUUaggu -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 229079 | 0.66 | 0.938103 |
Target: 5'- cGCGCGGCGUuuuugGCCAAcagcacggGCCGcg-CCAu -3' miRNA: 3'- cUGCGCCGCG-----UGGUUa-------CGGCuuaGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 191481 | 0.66 | 0.927771 |
Target: 5'- --aGCGGUacagccGCACCAccucgcccgcgccGUGCCGAAaCCAc -3' miRNA: 3'- cugCGCCG------CGUGGU-------------UACGGCUUaGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 156568 | 0.66 | 0.942672 |
Target: 5'- -cCGCGG-GCACCGccGCCGGAggcgcgguUCCc -3' miRNA: 3'- cuGCGCCgCGUGGUuaCGGCUU--------AGGu -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 166529 | 0.66 | 0.947015 |
Target: 5'- cGAuCGCGGCGCcCCAcuUGCCgcuguacaacGAAUUCAc -3' miRNA: 3'- -CU-GCGCCGCGuGGUu-ACGG----------CUUAGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 30022 | 0.66 | 0.942672 |
Target: 5'- aGCcUGGCGC-UCAcgGCCGAGUUCGg -3' miRNA: 3'- cUGcGCCGCGuGGUuaCGGCUUAGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 80840 | 0.66 | 0.947015 |
Target: 5'- cGugGCcGCGCuAUCGAUGCCu-GUCCu -3' miRNA: 3'- -CugCGcCGCG-UGGUUACGGcuUAGGu -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 91387 | 0.66 | 0.947015 |
Target: 5'- aGugGCGGCGUAgCCAuUGUCu--UCCGu -3' miRNA: 3'- -CugCGCCGCGU-GGUuACGGcuuAGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 148793 | 0.66 | 0.947015 |
Target: 5'- cGGCGgGuGCGCACCGccgGUGCUGcugcugacuUCCAc -3' miRNA: 3'- -CUGCgC-CGCGUGGU---UACGGCuu-------AGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 73655 | 0.66 | 0.947015 |
Target: 5'- -cCGCuGGCgGCGCCGcUGCCGGG-CCu -3' miRNA: 3'- cuGCG-CCG-CGUGGUuACGGCUUaGGu -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 190766 | 0.66 | 0.951135 |
Target: 5'- gGGCGCGGCGacauGCCGuugcGCUGGG-CCAu -3' miRNA: 3'- -CUGCGCCGCg---UGGUua--CGGCUUaGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 64422 | 0.67 | 0.905916 |
Target: 5'- --gGCGGCagggaCACCGAUGUCGAG-CCGg -3' miRNA: 3'- cugCGCCGc----GUGGUUACGGCUUaGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 223272 | 0.67 | 0.905916 |
Target: 5'- cGAUGcCGGUcCACCAGaugauauugagGCCGGAUCCGa -3' miRNA: 3'- -CUGC-GCCGcGUGGUUa----------CGGCUUAGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 68709 | 0.67 | 0.905916 |
Target: 5'- cGCGCGGCGcCGCCGGcuacgcGuCCGggUuCCAg -3' miRNA: 3'- cUGCGCCGC-GUGGUUa-----C-GGCuuA-GGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 141907 | 0.67 | 0.915867 |
Target: 5'- cGACGUGGacgGCACUAcggGCCGAcgcagguucuccuuGUCCGa -3' miRNA: 3'- -CUGCGCCg--CGUGGUua-CGGCU--------------UAGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 136716 | 0.67 | 0.917555 |
Target: 5'- cACGgaGGCGCACgCGAUGCUGcacAUCCc -3' miRNA: 3'- cUGCg-CCGCGUG-GUUACGGCu--UAGGu -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 146390 | 0.67 | 0.917555 |
Target: 5'- gGACGCGGUaGCGgCAGUGUCaAGUaCCAg -3' miRNA: 3'- -CUGCGCCG-CGUgGUUACGGcUUA-GGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 69323 | 0.67 | 0.923034 |
Target: 5'- --aGCGGCGCcgccauGCCAGggGCCGA--CCAu -3' miRNA: 3'- cugCGCCGCG------UGGUUa-CGGCUuaGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 74308 | 0.67 | 0.917555 |
Target: 5'- cACGCGGCGUAUCcucaaGuuGggUCCc -3' miRNA: 3'- cUGCGCCGCGUGGuua--CggCuuAGGu -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 192321 | 0.67 | 0.923034 |
Target: 5'- aGCGCGGcCGCucCCAcUGCuCGcGGUCCAg -3' miRNA: 3'- cUGCGCC-GCGu-GGUuACG-GC-UUAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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