Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1810 | 3' | -56.3 | NC_001347.2 | + | 182543 | 1.09 | 0.004187 |
Target: 5'- aGACGCGGCGCACCAAUGCCGAAUCCAa -3' miRNA: 3'- -CUGCGCCGCGUGGUUACGGCUUAGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 120723 | 0.79 | 0.310781 |
Target: 5'- cACGCGGC-CGCCuuaagGCCGAGUCCAc -3' miRNA: 3'- cUGCGCCGcGUGGuua--CGGCUUAGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 137920 | 0.75 | 0.529807 |
Target: 5'- gGACGCGGCaGCaACCAGgcGCCGGcgCCGc -3' miRNA: 3'- -CUGCGCCG-CG-UGGUUa-CGGCUuaGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 188595 | 0.74 | 0.572794 |
Target: 5'- aACGUGGCGCGugGAUGCCGGccgagacauuuacguGUCCAa -3' miRNA: 3'- cUGCGCCGCGUggUUACGGCU---------------UAGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 58221 | 0.74 | 0.578728 |
Target: 5'- aGCGCuGCGCGCCGAcaUGCuCGAGUUCGg -3' miRNA: 3'- cUGCGcCGCGUGGUU--ACG-GCUUAGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 143026 | 0.73 | 0.598592 |
Target: 5'- gGAUGCGGCGCGCCGuacCCGucUCCu -3' miRNA: 3'- -CUGCGCCGCGUGGUuacGGCuuAGGu -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 114657 | 0.73 | 0.608562 |
Target: 5'- aGACGUGGuCGCGCCGAUcGCUGuaggCCAa -3' miRNA: 3'- -CUGCGCC-GCGUGGUUA-CGGCuua-GGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 133984 | 0.73 | 0.61855 |
Target: 5'- uGCGCGGCGCACaugaucaucuCGGUGCUGAG-CCu -3' miRNA: 3'- cUGCGCCGCGUG----------GUUACGGCUUaGGu -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 213184 | 0.73 | 0.638547 |
Target: 5'- aACGaCGGcCGCGCC-AUGCCGGucGUCCGc -3' miRNA: 3'- cUGC-GCC-GCGUGGuUACGGCU--UAGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 56734 | 0.72 | 0.668488 |
Target: 5'- gGugGCGGCaGCcucucuucgcugGCCAAUGCCGGcgGUCUg -3' miRNA: 3'- -CugCGCCG-CG------------UGGUUACGGCU--UAGGu -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 75999 | 0.72 | 0.687333 |
Target: 5'- uGGCGUGGUGCucaugacGCCGGUGCCGGc-CCAc -3' miRNA: 3'- -CUGCGCCGCG-------UGGUUACGGCUuaGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 141112 | 0.72 | 0.698174 |
Target: 5'- uGCGUGGUGaGCCGGUGCUGcGGUCCGu -3' miRNA: 3'- cUGCGCCGCgUGGUUACGGC-UUAGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 192355 | 0.71 | 0.717714 |
Target: 5'- aGCGCGGCGCGCgGGUGCaggugcagCGcGUCCc -3' miRNA: 3'- cUGCGCCGCGUGgUUACG--------GCuUAGGu -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 31253 | 0.71 | 0.746479 |
Target: 5'- aGACGUGGCGUACUg--GCCG--UCCGu -3' miRNA: 3'- -CUGCGCCGCGUGGuuaCGGCuuAGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 38617 | 0.71 | 0.746479 |
Target: 5'- uGGCGUGGCGCACgCAGcgaccguaguUGUCGcGGUCCGc -3' miRNA: 3'- -CUGCGCCGCGUG-GUU----------ACGGC-UUAGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 131145 | 0.71 | 0.746479 |
Target: 5'- -cCGCGGCGCGCguAcGCCGAGaCCc -3' miRNA: 3'- cuGCGCCGCGUGguUaCGGCUUaGGu -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 162055 | 0.71 | 0.755887 |
Target: 5'- aGACGCGGCGCcgcaACCAccGCC---UCCGc -3' miRNA: 3'- -CUGCGCCGCG----UGGUuaCGGcuuAGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 138694 | 0.7 | 0.791504 |
Target: 5'- uACGUGGCGCACCAaaagcacGUGUCGcAGUUUg -3' miRNA: 3'- cUGCGCCGCGUGGU-------UACGGC-UUAGGu -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 191188 | 0.7 | 0.792391 |
Target: 5'- uGCGCGGCGuCACCcgcGCguaGAAUCCGu -3' miRNA: 3'- cUGCGCCGC-GUGGuuaCGg--CUUAGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 58537 | 0.7 | 0.792391 |
Target: 5'- cGCGCuuGGaCGCGCUAAUGUCGGcGUCCGa -3' miRNA: 3'- cUGCG--CC-GCGUGGUUACGGCU-UAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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