Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1810 | 3' | -56.3 | NC_001347.2 | + | 142937 | 0.67 | 0.899759 |
Target: 5'- aGCGCGGCGCGCaCGAucucgcugggguUGUgCGggUUCAc -3' miRNA: 3'- cUGCGCCGCGUG-GUU------------ACG-GCuuAGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 22188 | 0.68 | 0.893381 |
Target: 5'- aGAUG-GGCGCACCGAcgGCgGAG-CCGc -3' miRNA: 3'- -CUGCgCCGCGUGGUUa-CGgCUUaGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 36712 | 0.68 | 0.886784 |
Target: 5'- -cCGCuGCGaC-CCGGUGCaCGAAUCCAu -3' miRNA: 3'- cuGCGcCGC-GuGGUUACG-GCUUAGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 103588 | 0.68 | 0.879973 |
Target: 5'- uGACGCGGCGCccgaaGCgCAGUGCacgcgCGAA-CCGg -3' miRNA: 3'- -CUGCGCCGCG-----UG-GUUACG-----GCUUaGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 214221 | 0.68 | 0.879973 |
Target: 5'- cGGCcCGGCaGCACC-AUGCCGGAgCUAc -3' miRNA: 3'- -CUGcGCCG-CGUGGuUACGGCUUaGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 100781 | 0.68 | 0.872952 |
Target: 5'- aGCGCGGCGcCGCCuc-GUCGggUaCCu -3' miRNA: 3'- cUGCGCCGC-GUGGuuaCGGCuuA-GGu -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 34445 | 0.68 | 0.872952 |
Target: 5'- cGCGCuucgaGGCGUGCCcuUGCCGcccGAUCCGc -3' miRNA: 3'- cUGCG-----CCGCGUGGuuACGGC---UUAGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 182815 | 0.68 | 0.858295 |
Target: 5'- aGACGCGGCGaCGCCucuccacgGCCGAc---- -3' miRNA: 3'- -CUGCGCCGC-GUGGuua-----CGGCUuaggu -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 75462 | 0.69 | 0.842859 |
Target: 5'- --aGCGGCGCGCaCAGUcGCCGcaguuGUUCAa -3' miRNA: 3'- cugCGCCGCGUG-GUUA-CGGCu----UAGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 73482 | 0.69 | 0.834863 |
Target: 5'- cGGCaGCGGCGgGCCAGgacGUCGGaggGUCCGc -3' miRNA: 3'- -CUG-CGCCGCgUGGUUa--CGGCU---UAGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 57585 | 0.69 | 0.826692 |
Target: 5'- cGACGCuGGCGCugCg--GCUGAAgCCGu -3' miRNA: 3'- -CUGCG-CCGCGugGuuaCGGCUUaGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 129409 | 0.69 | 0.826692 |
Target: 5'- cGGCGCGGCGCAgCGccgGCCauucUCCGg -3' miRNA: 3'- -CUGCGCCGCGUgGUua-CGGcuu-AGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 79366 | 0.69 | 0.818351 |
Target: 5'- --aGCGGCGUGCCG-UGCgCGAAUgCAu -3' miRNA: 3'- cugCGCCGCGUGGUuACG-GCUUAgGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 227907 | 0.69 | 0.818351 |
Target: 5'- gGACGCgagucGGCGC-CCGccGCCGAggCCGc -3' miRNA: 3'- -CUGCG-----CCGCGuGGUuaCGGCUuaGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 41424 | 0.69 | 0.809849 |
Target: 5'- uGGCGcCGGCGCuGCCAuccucacGCCGAcgCCu -3' miRNA: 3'- -CUGC-GCCGCG-UGGUua-----CGGCUuaGGu -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 90438 | 0.7 | 0.801193 |
Target: 5'- cGAUuCGGCuuACCAAccUGCCGAAUCUAu -3' miRNA: 3'- -CUGcGCCGcgUGGUU--ACGGCUUAGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 58537 | 0.7 | 0.792391 |
Target: 5'- cGCGCuuGGaCGCGCUAAUGUCGGcGUCCGa -3' miRNA: 3'- cUGCG--CC-GCGUGGUUACGGCU-UAGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 191188 | 0.7 | 0.792391 |
Target: 5'- uGCGCGGCGuCACCcgcGCguaGAAUCCGu -3' miRNA: 3'- cUGCGCCGC-GUGGuuaCGg--CUUAGGU- -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 138694 | 0.7 | 0.791504 |
Target: 5'- uACGUGGCGCACCAaaagcacGUGUCGcAGUUUg -3' miRNA: 3'- cUGCGCCGCGUGGU-------UACGGC-UUAGGu -5' |
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1810 | 3' | -56.3 | NC_001347.2 | + | 162055 | 0.71 | 0.755887 |
Target: 5'- aGACGCGGCGCcgcaACCAccGCC---UCCGc -3' miRNA: 3'- -CUGCGCCGCG----UGGUuaCGGcuuAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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