miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1810 3' -56.3 NC_001347.2 + 22188 0.68 0.893381
Target:  5'- aGAUG-GGCGCACCGAcgGCgGAG-CCGc -3'
miRNA:   3'- -CUGCgCCGCGUGGUUa-CGgCUUaGGU- -5'
1810 3' -56.3 NC_001347.2 + 30022 0.66 0.942672
Target:  5'- aGCcUGGCGC-UCAcgGCCGAGUUCGg -3'
miRNA:   3'- cUGcGCCGCGuGGUuaCGGCUUAGGU- -5'
1810 3' -56.3 NC_001347.2 + 31253 0.71 0.746479
Target:  5'- aGACGUGGCGUACUg--GCCG--UCCGu -3'
miRNA:   3'- -CUGCGCCGCGUGGuuaCGGCuuAGGU- -5'
1810 3' -56.3 NC_001347.2 + 34445 0.68 0.872952
Target:  5'- cGCGCuucgaGGCGUGCCcuUGCCGcccGAUCCGc -3'
miRNA:   3'- cUGCG-----CCGCGUGGuuACGGC---UUAGGU- -5'
1810 3' -56.3 NC_001347.2 + 36712 0.68 0.886784
Target:  5'- -cCGCuGCGaC-CCGGUGCaCGAAUCCAu -3'
miRNA:   3'- cuGCGcCGC-GuGGUUACG-GCUUAGGU- -5'
1810 3' -56.3 NC_001347.2 + 38617 0.71 0.746479
Target:  5'- uGGCGUGGCGCACgCAGcgaccguaguUGUCGcGGUCCGc -3'
miRNA:   3'- -CUGCGCCGCGUG-GUU----------ACGGC-UUAGGU- -5'
1810 3' -56.3 NC_001347.2 + 41424 0.69 0.809849
Target:  5'- uGGCGcCGGCGCuGCCAuccucacGCCGAcgCCu -3'
miRNA:   3'- -CUGC-GCCGCG-UGGUua-----CGGCUuaGGu -5'
1810 3' -56.3 NC_001347.2 + 56734 0.72 0.668488
Target:  5'- gGugGCGGCaGCcucucuucgcugGCCAAUGCCGGcgGUCUg -3'
miRNA:   3'- -CugCGCCG-CG------------UGGUUACGGCU--UAGGu -5'
1810 3' -56.3 NC_001347.2 + 57585 0.69 0.826692
Target:  5'- cGACGCuGGCGCugCg--GCUGAAgCCGu -3'
miRNA:   3'- -CUGCG-CCGCGugGuuaCGGCUUaGGU- -5'
1810 3' -56.3 NC_001347.2 + 58221 0.74 0.578728
Target:  5'- aGCGCuGCGCGCCGAcaUGCuCGAGUUCGg -3'
miRNA:   3'- cUGCGcCGCGUGGUU--ACG-GCUUAGGU- -5'
1810 3' -56.3 NC_001347.2 + 58537 0.7 0.792391
Target:  5'- cGCGCuuGGaCGCGCUAAUGUCGGcGUCCGa -3'
miRNA:   3'- cUGCG--CC-GCGUGGUUACGGCU-UAGGU- -5'
1810 3' -56.3 NC_001347.2 + 64422 0.67 0.905916
Target:  5'- --gGCGGCagggaCACCGAUGUCGAG-CCGg -3'
miRNA:   3'- cugCGCCGc----GUGGUUACGGCUUaGGU- -5'
1810 3' -56.3 NC_001347.2 + 68709 0.67 0.905916
Target:  5'- cGCGCGGCGcCGCCGGcuacgcGuCCGggUuCCAg -3'
miRNA:   3'- cUGCGCCGC-GUGGUUa-----C-GGCuuA-GGU- -5'
1810 3' -56.3 NC_001347.2 + 69323 0.67 0.923034
Target:  5'- --aGCGGCGCcgccauGCCAGggGCCGA--CCAu -3'
miRNA:   3'- cugCGCCGCG------UGGUUa-CGGCUuaGGU- -5'
1810 3' -56.3 NC_001347.2 + 73482 0.69 0.834863
Target:  5'- cGGCaGCGGCGgGCCAGgacGUCGGaggGUCCGc -3'
miRNA:   3'- -CUG-CGCCGCgUGGUUa--CGGCU---UAGGU- -5'
1810 3' -56.3 NC_001347.2 + 73655 0.66 0.947015
Target:  5'- -cCGCuGGCgGCGCCGcUGCCGGG-CCu -3'
miRNA:   3'- cuGCG-CCG-CGUGGUuACGGCUUaGGu -5'
1810 3' -56.3 NC_001347.2 + 74308 0.67 0.917555
Target:  5'- cACGCGGCGUAUCcucaaGuuGggUCCc -3'
miRNA:   3'- cUGCGCCGCGUGGuua--CggCuuAGGu -5'
1810 3' -56.3 NC_001347.2 + 75462 0.69 0.842859
Target:  5'- --aGCGGCGCGCaCAGUcGCCGcaguuGUUCAa -3'
miRNA:   3'- cugCGCCGCGUG-GUUA-CGGCu----UAGGU- -5'
1810 3' -56.3 NC_001347.2 + 75999 0.72 0.687333
Target:  5'- uGGCGUGGUGCucaugacGCCGGUGCCGGc-CCAc -3'
miRNA:   3'- -CUGCGCCGCG-------UGGUUACGGCUuaGGU- -5'
1810 3' -56.3 NC_001347.2 + 79366 0.69 0.818351
Target:  5'- --aGCGGCGUGCCG-UGCgCGAAUgCAu -3'
miRNA:   3'- cugCGCCGCGUGGUuACG-GCUUAgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.