Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1810 | 5' | -62.6 | NC_001347.2 | + | 4406 | 0.66 | 0.75014 |
Target: 5'- cCGUuCCUCguaggcUGGUccUGGggaacgGGUCGGCGGCc -3' miRNA: 3'- -GCAcGGAG------GCCA--ACCa-----CCGGCCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 8186 | 0.66 | 0.741173 |
Target: 5'- -aUGCCgCCGGccaccaaccGGaGGCaCGGCGGCu -3' miRNA: 3'- gcACGGaGGCCaa-------CCaCCG-GCCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 228360 | 0.66 | 0.75014 |
Target: 5'- gGUGCUgcccgCgCGG-UGGcugGGCUGcGCGGCg -3' miRNA: 3'- gCACGGa----G-GCCaACCa--CCGGC-CGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 134102 | 0.66 | 0.75014 |
Target: 5'- --gGCCUCgGGcacgggcgUGGcGGCCGuaGGCg -3' miRNA: 3'- gcaCGGAGgCCa-------ACCaCCGGCcgCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 216292 | 0.66 | 0.723 |
Target: 5'- aCGUcUCUCCGGUaacuaucGGcGGCCGG-GGCu -3' miRNA: 3'- -GCAcGGAGGCCAa------CCaCCGGCCgCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 222333 | 0.66 | 0.71381 |
Target: 5'- gGUGCgaCUGac-GGUGG-CGGCGGCa -3' miRNA: 3'- gCACGgaGGCcaaCCACCgGCCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 77904 | 0.67 | 0.657666 |
Target: 5'- gCGUcGCCUgcgaCGGcgGGUGGagaugaGGCGGCg -3' miRNA: 3'- -GCA-CGGAg---GCCaaCCACCgg----CCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 228161 | 0.67 | 0.657666 |
Target: 5'- gCGUGCCUaacgCGGacgcgcacgcGGUGGUCGG-GGCg -3' miRNA: 3'- -GCACGGAg---GCCaa--------CCACCGGCCgCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 56582 | 0.67 | 0.694325 |
Target: 5'- gGUGgUUCCGGUacgcggaaaaUgagcagcGGUGG-CGGCGGCg -3' miRNA: 3'- gCACgGAGGCCA----------A-------CCACCgGCCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 228205 | 0.67 | 0.695258 |
Target: 5'- uGUGCCUCCGcagccguacGGcgccGCCGGCGGg -3' miRNA: 3'- gCACGGAGGCcaa------CCac--CGGCCGCCg -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 90978 | 0.67 | 0.68591 |
Target: 5'- gCGUGCCUaCCGaucUGGcGGCguugugcgCGGCGGUg -3' miRNA: 3'- -GCACGGA-GGCca-ACCaCCG--------GCCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 38109 | 0.67 | 0.667108 |
Target: 5'- --cGUCUCCGGaUGaGcGGCCG-CGGCg -3' miRNA: 3'- gcaCGGAGGCCaAC-CaCCGGCcGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 199682 | 0.67 | 0.667108 |
Target: 5'- -cUGCggCCGGccgcGGU-GCCGGCGGCu -3' miRNA: 3'- gcACGgaGGCCaa--CCAcCGGCCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 56640 | 0.68 | 0.600878 |
Target: 5'- uCG-GCgUCUGGgaggaGGUGGCggCGGUGGCg -3' miRNA: 3'- -GCaCGgAGGCCaa---CCACCG--GCCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 153234 | 0.68 | 0.648208 |
Target: 5'- gCGUGCCgCCGGccucGGacgaagcGGCagCGGCGGCa -3' miRNA: 3'- -GCACGGaGGCCaa--CCa------CCG--GCCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 129047 | 0.69 | 0.591448 |
Target: 5'- aCGUGCaggugCCGcGU--GUGGCCaGCGGCg -3' miRNA: 3'- -GCACGga---GGC-CAacCACCGGcCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 147579 | 0.69 | 0.591448 |
Target: 5'- gGUGUa--CGGgUGGUGGCgguggugcagCGGCGGCu -3' miRNA: 3'- gCACGgagGCCaACCACCG----------GCCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 200582 | 0.69 | 0.585801 |
Target: 5'- --aGCCUCCGGaacccucuggcgaucUgccuguugUGGUGGCUgggagugguGGCGGCa -3' miRNA: 3'- gcaCGGAGGCC---------------A--------ACCACCGG---------CCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 82395 | 0.69 | 0.582043 |
Target: 5'- gCGUaGCCaUUgGGgccgugGGUGGCgCGGUGGCc -3' miRNA: 3'- -GCA-CGG-AGgCCaa----CCACCG-GCCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 40536 | 0.69 | 0.563331 |
Target: 5'- aGUGCCcccccgucUCCGGUgaaaGGCCGG-GGCa -3' miRNA: 3'- gCACGG--------AGGCCAaccaCCGGCCgCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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