Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1810 | 5' | -62.6 | NC_001347.2 | + | 182509 | 1.11 | 0.000923 |
Target: 5'- cCGUGCCUCCGGUUGGUGGCCGGCGGCa -3' miRNA: 3'- -GCACGGAGGCCAACCACCGGCCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 48067 | 0.76 | 0.250419 |
Target: 5'- gCGUcGCCUUCGGUgacgucggUGGUGGCUGuaGGCu -3' miRNA: 3'- -GCA-CGGAGGCCA--------ACCACCGGCcgCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 230093 | 0.74 | 0.298257 |
Target: 5'- uGUGCCggCGGggugUGGUGGCgggguguguCGGCGGUg -3' miRNA: 3'- gCACGGagGCCa---ACCACCG---------GCCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 614 | 0.74 | 0.298257 |
Target: 5'- uGUGCCggCGGggugUGGUGGCgggguguguCGGCGGUg -3' miRNA: 3'- gCACGGagGCCa---ACCACCG---------GCCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 117658 | 0.73 | 0.344252 |
Target: 5'- uCGcGCCgacgguaauaggCCGGUgaUGGUGG-CGGCGGCa -3' miRNA: 3'- -GCaCGGa-----------GGCCA--ACCACCgGCCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 163509 | 0.72 | 0.382731 |
Target: 5'- aCGUccGCCcgaCGG-UGGUGGCggCGGCGGCa -3' miRNA: 3'- -GCA--CGGag-GCCaACCACCG--GCCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 81682 | 0.72 | 0.406194 |
Target: 5'- gCGUGaCCggCGGUgcggucgcgGGUGGCCGGCGucaGCg -3' miRNA: 3'- -GCAC-GGagGCCAa--------CCACCGGCCGC---CG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 151944 | 0.71 | 0.464293 |
Target: 5'- gCGUGguCCgggcggacCCGGcgUGGUGGgacCCGGCGGCg -3' miRNA: 3'- -GCAC--GGa-------GGCCa-ACCACC---GGCCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 227623 | 0.7 | 0.490489 |
Target: 5'- --gGCCa-CGGUgguuaUGGaGGCCGGCGGCc -3' miRNA: 3'- gcaCGGagGCCA-----ACCaCCGGCCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 40536 | 0.69 | 0.563331 |
Target: 5'- aGUGCCcccccgucUCCGGUgaaaGGCCGG-GGCa -3' miRNA: 3'- gCACGG--------AGGCCAaccaCCGGCCgCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 82395 | 0.69 | 0.582043 |
Target: 5'- gCGUaGCCaUUgGGgccgugGGUGGCgCGGUGGCc -3' miRNA: 3'- -GCA-CGG-AGgCCaa----CCACCG-GCCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 200582 | 0.69 | 0.585801 |
Target: 5'- --aGCCUCCGGaacccucuggcgaucUgccuguugUGGUGGCUgggagugguGGCGGCa -3' miRNA: 3'- gcaCGGAGGCC---------------A--------ACCACCGG---------CCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 147579 | 0.69 | 0.591448 |
Target: 5'- gGUGUa--CGGgUGGUGGCgguggugcagCGGCGGCu -3' miRNA: 3'- gCACGgagGCCaACCACCG----------GCCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 129047 | 0.69 | 0.591448 |
Target: 5'- aCGUGCaggugCCGcGU--GUGGCCaGCGGCg -3' miRNA: 3'- -GCACGga---GGC-CAacCACCGGcCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 56640 | 0.68 | 0.600878 |
Target: 5'- uCG-GCgUCUGGgaggaGGUGGCggCGGUGGCg -3' miRNA: 3'- -GCaCGgAGGCCaa---CCACCG--GCCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 153234 | 0.68 | 0.648208 |
Target: 5'- gCGUGCCgCCGGccucGGacgaagcGGCagCGGCGGCa -3' miRNA: 3'- -GCACGGaGGCCaa--CCa------CCG--GCCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 77904 | 0.67 | 0.657666 |
Target: 5'- gCGUcGCCUgcgaCGGcgGGUGGagaugaGGCGGCg -3' miRNA: 3'- -GCA-CGGAg---GCCaaCCACCgg----CCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 228161 | 0.67 | 0.657666 |
Target: 5'- gCGUGCCUaacgCGGacgcgcacgcGGUGGUCGG-GGCg -3' miRNA: 3'- -GCACGGAg---GCCaa--------CCACCGGCCgCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 199682 | 0.67 | 0.667108 |
Target: 5'- -cUGCggCCGGccgcGGU-GCCGGCGGCu -3' miRNA: 3'- gcACGgaGGCCaa--CCAcCGGCCGCCG- -5' |
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1810 | 5' | -62.6 | NC_001347.2 | + | 38109 | 0.67 | 0.667108 |
Target: 5'- --cGUCUCCGGaUGaGcGGCCG-CGGCg -3' miRNA: 3'- gcaCGGAGGCCaAC-CaCCGGCcGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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