miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18100 3' -53.4 NC_004680.1 + 10360 0.66 0.857419
Target:  5'- cUCCUUCGccagccaCGACAACGGGaugC-CCCGCa -3'
miRNA:   3'- -AGGAGGCc------GCUGUUGUUUa--GuGGGCG- -5'
18100 3' -53.4 NC_004680.1 + 52475 0.66 0.857419
Target:  5'- aCCagcaaUGaGCGACAACGAA-CACCCGa -3'
miRNA:   3'- aGGag---GC-CGCUGUUGUUUaGUGGGCg -5'
18100 3' -53.4 NC_004680.1 + 17855 0.66 0.857419
Target:  5'- gCCUaUCGGUGGCAucuCGAAUCAgaCGCc -3'
miRNA:   3'- aGGA-GGCCGCUGUu--GUUUAGUggGCG- -5'
18100 3' -53.4 NC_004680.1 + 16150 0.66 0.857419
Target:  5'- aCCaUCCGGCGAUugAGCGGuUCuAUCCGa -3'
miRNA:   3'- aGG-AGGCCGCUG--UUGUUuAG-UGGGCg -5'
18100 3' -53.4 NC_004680.1 + 34536 0.66 0.857419
Target:  5'- aCUaCC-GCGGCGGCGAA-CACuCCGCg -3'
miRNA:   3'- aGGaGGcCGCUGUUGUUUaGUG-GGCG- -5'
18100 3' -53.4 NC_004680.1 + 46963 0.66 0.857419
Target:  5'- uUCCguuguggaCGGCuuuAUAGCGGGUCACCUGUc -3'
miRNA:   3'- -AGGag------GCCGc--UGUUGUUUAGUGGGCG- -5'
18100 3' -53.4 NC_004680.1 + 33613 0.66 0.857419
Target:  5'- ---aCCGGCGGCGAUc---CGCaCCGCa -3'
miRNA:   3'- aggaGGCCGCUGUUGuuuaGUG-GGCG- -5'
18100 3' -53.4 NC_004680.1 + 39086 0.66 0.848982
Target:  5'- -gCUUCGGCGAUAcgcaucguCAAGUCAUCCu- -3'
miRNA:   3'- agGAGGCCGCUGUu-------GUUUAGUGGGcg -5'
18100 3' -53.4 NC_004680.1 + 48967 0.66 0.848982
Target:  5'- gCCUUggCGGaUGACGAagAAGUCACCgCGCu -3'
miRNA:   3'- aGGAG--GCC-GCUGUUg-UUUAGUGG-GCG- -5'
18100 3' -53.4 NC_004680.1 + 29118 0.66 0.848982
Target:  5'- aCCcaaUCGGUGGCGAguAGgucaaccgCGCCCGCg -3'
miRNA:   3'- aGGa--GGCCGCUGUUguUUa-------GUGGGCG- -5'
18100 3' -53.4 NC_004680.1 + 2743 0.66 0.848982
Target:  5'- aUCCgccaCGGCuGCAACGGGUCAa-CGCu -3'
miRNA:   3'- -AGGag--GCCGcUGUUGUUUAGUggGCG- -5'
18100 3' -53.4 NC_004680.1 + 21550 0.66 0.848982
Target:  5'- gCCUCaucuGGCGAgCAACGccggaGCCUGCg -3'
miRNA:   3'- aGGAGg---CCGCU-GUUGUuuag-UGGGCG- -5'
18100 3' -53.4 NC_004680.1 + 9278 0.66 0.848125
Target:  5'- --aUCgCGGCGgaaacguACAACgAGAUCGCCCGg -3'
miRNA:   3'- aggAG-GCCGC-------UGUUG-UUUAGUGGGCg -5'
18100 3' -53.4 NC_004680.1 + 50365 0.66 0.837674
Target:  5'- cCCUCCGaGUGGCAu--GAUCACUgccccaauugguagCGCg -3'
miRNA:   3'- aGGAGGC-CGCUGUuguUUAGUGG--------------GCG- -5'
18100 3' -53.4 NC_004680.1 + 56775 0.66 0.831432
Target:  5'- gCCUCgGGCGA-GACAugaccucCACCCuGCa -3'
miRNA:   3'- aGGAGgCCGCUgUUGUuua----GUGGG-CG- -5'
18100 3' -53.4 NC_004680.1 + 35637 0.66 0.831432
Target:  5'- aCCUgCGGCGAUgucGACGu-UUGCCCaGCu -3'
miRNA:   3'- aGGAgGCCGCUG---UUGUuuAGUGGG-CG- -5'
18100 3' -53.4 NC_004680.1 + 27006 0.66 0.831432
Target:  5'- cUCUCCGaCGACuACAGG-CGCgCCGCc -3'
miRNA:   3'- aGGAGGCcGCUGuUGUUUaGUG-GGCG- -5'
18100 3' -53.4 NC_004680.1 + 4317 0.66 0.831432
Target:  5'- aCUUCCGGUaguCAACGGcgCGUCCGCc -3'
miRNA:   3'- aGGAGGCCGcu-GUUGUUuaGUGGGCG- -5'
18100 3' -53.4 NC_004680.1 + 6006 0.66 0.828725
Target:  5'- -gCUCCGGUGugAGCGcugcggcgcucggcAAUCcaaGCgCCGCa -3'
miRNA:   3'- agGAGGCCGCugUUGU--------------UUAG---UG-GGCG- -5'
18100 3' -53.4 NC_004680.1 + 9182 0.66 0.826
Target:  5'- cCCUgaugccaaUCGGCGACgcucAgcccgaaaaaccgccGCAGAUCACUCGCu -3'
miRNA:   3'- aGGA--------GGCCGCUG----U---------------UGUUUAGUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.