miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18100 5' -52.3 NC_004680.1 + 16128 0.66 0.901138
Target:  5'- cGGCGUGaUGAugUUGgccCGUAccaUCCGg -3'
miRNA:   3'- uCCGCACcACUugAGCau-GCAU---AGGC- -5'
18100 5' -52.3 NC_004680.1 + 38954 0.66 0.900448
Target:  5'- cGGGCGaacugcuUGGUGGAgUCGaugGCGUcguguAUCCa -3'
miRNA:   3'- -UCCGC-------ACCACUUgAGCa--UGCA-----UAGGc -5'
18100 5' -52.3 NC_004680.1 + 46154 0.67 0.855044
Target:  5'- aGGGCGUGGUGucggcggaugaaGugUUGgGCGUcgUCGg -3'
miRNA:   3'- -UCCGCACCAC------------UugAGCaUGCAuaGGC- -5'
18100 5' -52.3 NC_004680.1 + 47233 0.68 0.810092
Target:  5'- uGGgG-GGUGAG-UCGUACG-GUCCGg -3'
miRNA:   3'- uCCgCaCCACUUgAGCAUGCaUAGGC- -5'
18100 5' -52.3 NC_004680.1 + 24516 0.68 0.810092
Target:  5'- gAGGCGcccacUGGUacGGGCUCGUugGUGagguugacguuuUCCa -3'
miRNA:   3'- -UCCGC-----ACCA--CUUGAGCAugCAU------------AGGc -5'
18100 5' -52.3 NC_004680.1 + 2806 0.69 0.739544
Target:  5'- cAGGC-UGGUGAcgcgaaucucagACUCGUGgGU-UCCGg -3'
miRNA:   3'- -UCCGcACCACU------------UGAGCAUgCAuAGGC- -5'
18100 5' -52.3 NC_004680.1 + 34090 0.71 0.641483
Target:  5'- cGGGUGUGGaUGAGCaaacgCGUAUGgagAUCCu -3'
miRNA:   3'- -UCCGCACC-ACUUGa----GCAUGCa--UAGGc -5'
18100 5' -52.3 NC_004680.1 + 50806 0.72 0.575197
Target:  5'- cGGCG-GGUGGAUUCGUACcaggCCGc -3'
miRNA:   3'- uCCGCaCCACUUGAGCAUGcauaGGC- -5'
18100 5' -52.3 NC_004680.1 + 19199 0.72 0.564265
Target:  5'- aAGGCGUcGGUGAcccGCUCGggcgAUGUG-CCGu -3'
miRNA:   3'- -UCCGCA-CCACU---UGAGCa---UGCAUaGGC- -5'
18100 5' -52.3 NC_004680.1 + 20201 1.1 0.002193
Target:  5'- cAGGCGUGGUGAACUCGUACGUAUCCGa -3'
miRNA:   3'- -UCCGCACCACUUGAGCAUGCAUAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.