miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18101 5' -56.6 NC_004680.1 + 25175 0.66 0.664183
Target:  5'- gCGCaGCGGAaaaGGUGcggacggCUGCAACAa -3'
miRNA:   3'- gGCG-CGCCUgg-CCACua-----GACGUUGUa -5'
18101 5' -56.6 NC_004680.1 + 3852 0.66 0.664183
Target:  5'- aCGCGCGG-CCcGUGAUCa-CAGCAc -3'
miRNA:   3'- gGCGCGCCuGGcCACUAGacGUUGUa -5'
18101 5' -56.6 NC_004680.1 + 42935 0.66 0.664183
Target:  5'- cCCGCaaaGCGGAUcugCGGU-AUUUGCGACGUc -3'
miRNA:   3'- -GGCG---CGCCUG---GCCAcUAGACGUUGUA- -5'
18101 5' -56.6 NC_004680.1 + 5586 0.67 0.620796
Target:  5'- aCCaGCGCGGAcacuuCCGGcgacgcugcUGGUCUGCgGGCGg -3'
miRNA:   3'- -GG-CGCGCCU-----GGCC---------ACUAGACG-UUGUa -5'
18101 5' -56.6 NC_004680.1 + 29054 0.67 0.609949
Target:  5'- aCGUGCGGGCCGcGcGuUCgGCGGCGUc -3'
miRNA:   3'- gGCGCGCCUGGC-CaCuAGaCGUUGUA- -5'
18101 5' -56.6 NC_004680.1 + 3992 0.67 0.588322
Target:  5'- aCgGCGCuGACCGGcacgGAgugccgCUGCGACGc -3'
miRNA:   3'- -GgCGCGcCUGGCCa---CUa-----GACGUUGUa -5'
18101 5' -56.6 NC_004680.1 + 9246 0.67 0.581858
Target:  5'- uUCGCGgGGGCCGcUGGUCUgagucggaguugaucGCGGCGg -3'
miRNA:   3'- -GGCGCgCCUGGCcACUAGA---------------CGUUGUa -5'
18101 5' -56.6 NC_004680.1 + 42305 0.68 0.565767
Target:  5'- uUCGCGCGGGCacgcugcacggugCGGUGGUg-GCAGCc- -3'
miRNA:   3'- -GGCGCGCCUG-------------GCCACUAgaCGUUGua -5'
18101 5' -56.6 NC_004680.1 + 43780 0.69 0.483503
Target:  5'- cCCGUGUGGAUgCGGUGAUCggGUcguugGACAg -3'
miRNA:   3'- -GGCGCGCCUG-GCCACUAGa-CG-----UUGUa -5'
18101 5' -56.6 NC_004680.1 + 33997 0.7 0.444072
Target:  5'- gCCGUGCGGAuugUCGGUGcggaguuUCUGCAucgccACAUa -3'
miRNA:   3'- -GGCGCGCCU---GGCCACu------AGACGU-----UGUA- -5'
18101 5' -56.6 NC_004680.1 + 28944 0.72 0.321855
Target:  5'- aCGUGCGGGCCGGUGcGUUUcGCGaagaACAUg -3'
miRNA:   3'- gGCGCGCCUGGCCAC-UAGA-CGU----UGUA- -5'
18101 5' -56.6 NC_004680.1 + 15789 0.73 0.284738
Target:  5'- aCCGUuuucGuCGGGCCaGUGAUCUGCGACc- -3'
miRNA:   3'- -GGCG----C-GCCUGGcCACUAGACGUUGua -5'
18101 5' -56.6 NC_004680.1 + 20323 1.07 0.001193
Target:  5'- gCCGCGCGGACCGGUGAUCUGCAACAUc -3'
miRNA:   3'- -GGCGCGCCUGGCCACUAGACGUUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.