miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18103 3' -53.5 NC_004680.1 + 30922 0.66 0.825527
Target:  5'- -gUCGggcugGCcuacgGGUGUGAugaucgucGUCGCACCCa -3'
miRNA:   3'- agAGCa----CG-----UCGCACUua------CAGCGUGGG- -5'
18103 3' -53.5 NC_004680.1 + 42674 0.67 0.797193
Target:  5'- cUUCGccGCGGC-UGAugccGUGcCGCACCCu -3'
miRNA:   3'- aGAGCa-CGUCGcACU----UACaGCGUGGG- -5'
18103 3' -53.5 NC_004680.1 + 7536 0.67 0.777416
Target:  5'- aUCUCGUaGCGGCccacAUGcCGCACCa -3'
miRNA:   3'- -AGAGCA-CGUCGcacuUACaGCGUGGg -5'
18103 3' -53.5 NC_004680.1 + 33266 0.67 0.767295
Target:  5'- --aCGUuuGGCGUGGAUGUUGUcgAUCCa -3'
miRNA:   3'- agaGCAcgUCGCACUUACAGCG--UGGG- -5'
18103 3' -53.5 NC_004680.1 + 822 0.68 0.746643
Target:  5'- gUUCGcggcguggauuUGCGGUGUGGAgc-UGCACCCg -3'
miRNA:   3'- aGAGC-----------ACGUCGCACUUacaGCGUGGG- -5'
18103 3' -53.5 NC_004680.1 + 43556 0.68 0.746643
Target:  5'- --aCGUGUAGCGgugccagGAccgGUUGUGCCCa -3'
miRNA:   3'- agaGCACGUCGCa------CUua-CAGCGUGGG- -5'
18103 3' -53.5 NC_004680.1 + 13243 0.68 0.745597
Target:  5'- uUCUgGUGCGGCGguccgGUCGgggaccgccaggcCGCCCa -3'
miRNA:   3'- -AGAgCACGUCGCacuuaCAGC-------------GUGGG- -5'
18103 3' -53.5 NC_004680.1 + 33988 0.68 0.714815
Target:  5'- --aCGUGUGGCGUGGcGUGUucCGCGCUg -3'
miRNA:   3'- agaGCACGUCGCACU-UACA--GCGUGGg -5'
18103 3' -53.5 NC_004680.1 + 42225 0.68 0.711587
Target:  5'- --cCGUGCAGCGUGcccgcgcgaagacgGGUGUgGCGaaaCCg -3'
miRNA:   3'- agaGCACGUCGCAC--------------UUACAgCGUg--GG- -5'
18103 3' -53.5 NC_004680.1 + 30638 0.68 0.704026
Target:  5'- gCUCGaugGaCAGuCGUGAAUG-CGC-CCCg -3'
miRNA:   3'- aGAGCa--C-GUC-GCACUUACaGCGuGGG- -5'
18103 3' -53.5 NC_004680.1 + 58282 0.69 0.675672
Target:  5'- ---aGUGCGGCGUGGAgcuggucucggaaguUGUUGCACg- -3'
miRNA:   3'- agagCACGUCGCACUU---------------ACAGCGUGgg -5'
18103 3' -53.5 NC_004680.1 + 2382 0.7 0.627145
Target:  5'- gUUCGUuuCAGCGUGAGgcgCGCACCa -3'
miRNA:   3'- aGAGCAc-GUCGCACUUacaGCGUGGg -5'
18103 3' -53.5 NC_004680.1 + 53897 0.71 0.561252
Target:  5'- uUCUCGc-CGGCGU---UGUCGCGCCUg -3'
miRNA:   3'- -AGAGCacGUCGCAcuuACAGCGUGGG- -5'
18103 3' -53.5 NC_004680.1 + 21173 1.14 0.000847
Target:  5'- uUCUCGUGCAGCGUGAAUGUCGCACCCg -3'
miRNA:   3'- -AGAGCACGUCGCACUUACAGCGUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.