miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18104 3' -58.3 NC_004680.1 + 13697 0.66 0.563626
Target:  5'- aGCgGCCAaucuUCACCgaggucuuGCGAGC-CCGUGGUg -3'
miRNA:   3'- gUG-CGGU----GGUGG--------CGCUUGuGGCACCG- -5'
18104 3' -58.3 NC_004680.1 + 29149 0.66 0.560482
Target:  5'- uGCGgCGCCGCCG-GAcacugacagcacugACACCcaaucgGUGGCg -3'
miRNA:   3'- gUGCgGUGGUGGCgCU--------------UGUGG------CACCG- -5'
18104 3' -58.3 NC_004680.1 + 6030 0.67 0.557343
Target:  5'- gCACGCCAuCCAcacgggaagacugcuCCgguGUGAGCGCUGcGGCg -3'
miRNA:   3'- -GUGCGGU-GGU---------------GG---CGCUUGUGGCaCCG- -5'
18104 3' -58.3 NC_004680.1 + 42408 0.67 0.553165
Target:  5'- gCGgGCCACCucguuCUGCGAAgCACCaucGGCc -3'
miRNA:   3'- -GUgCGGUGGu----GGCGCUU-GUGGca-CCG- -5'
18104 3' -58.3 NC_004680.1 + 7198 0.67 0.553165
Target:  5'- cCACGCCACCAacacaCGaUGGAUACUc-GGCg -3'
miRNA:   3'- -GUGCGGUGGUg----GC-GCUUGUGGcaCCG- -5'
18104 3' -58.3 NC_004680.1 + 12219 0.67 0.542763
Target:  5'- aGCGUU-CC-CCGCGAGCGguuCCgGUGGCg -3'
miRNA:   3'- gUGCGGuGGuGGCGCUUGU---GG-CACCG- -5'
18104 3' -58.3 NC_004680.1 + 12572 0.67 0.542763
Target:  5'- -uCGUCgGCCACCgGUGAACAggcuUUGUGGCg -3'
miRNA:   3'- guGCGG-UGGUGG-CGCUUGU----GGCACCG- -5'
18104 3' -58.3 NC_004680.1 + 28503 0.67 0.542763
Target:  5'- cCGCGCCuugggaauaGCCAgCCaGgGcAGCGCCGUGGg -3'
miRNA:   3'- -GUGCGG---------UGGU-GG-CgC-UUGUGGCACCg -5'
18104 3' -58.3 NC_004680.1 + 21858 0.67 0.542763
Target:  5'- cCAUGCCAgCCcacuuauucgGCCGCGA-CGagGUGGCa -3'
miRNA:   3'- -GUGCGGU-GG----------UGGCGCUuGUggCACCG- -5'
18104 3' -58.3 NC_004680.1 + 2867 0.67 0.536553
Target:  5'- -uCGCCGCCGCCGguggugguguaccaGAACcCUGaUGGCa -3'
miRNA:   3'- guGCGGUGGUGGCg-------------CUUGuGGC-ACCG- -5'
18104 3' -58.3 NC_004680.1 + 23041 0.67 0.536553
Target:  5'- gAUGCUAUCGCCGCucuuggcgacugGAucaguguucacacugGCGCCGcUGGCa -3'
miRNA:   3'- gUGCGGUGGUGGCG------------CU---------------UGUGGC-ACCG- -5'
18104 3' -58.3 NC_004680.1 + 27762 0.67 0.532427
Target:  5'- gACGaCUggACCgAUCGCGAACucGCCGUGGa -3'
miRNA:   3'- gUGC-GG--UGG-UGGCGCUUG--UGGCACCg -5'
18104 3' -58.3 NC_004680.1 + 6262 0.67 0.532427
Target:  5'- gCACGUCACCuuACgGUGA-CGCCG-GGUu -3'
miRNA:   3'- -GUGCGGUGG--UGgCGCUuGUGGCaCCG- -5'
18104 3' -58.3 NC_004680.1 + 52180 0.67 0.522162
Target:  5'- --aGCCcUCGCCGCaGAGCugCGccGGCa -3'
miRNA:   3'- gugCGGuGGUGGCG-CUUGugGCa-CCG- -5'
18104 3' -58.3 NC_004680.1 + 29105 0.67 0.522162
Target:  5'- gAUGuCUAUCGgCGCgGAACGCCGcGGCa -3'
miRNA:   3'- gUGC-GGUGGUgGCG-CUUGUGGCaCCG- -5'
18104 3' -58.3 NC_004680.1 + 28979 0.67 0.505901
Target:  5'- aCGCGCgGCCcgcacguucgcccaaACCGCGAucgccACACuCGgcgcgGGCg -3'
miRNA:   3'- -GUGCGgUGG---------------UGGCGCU-----UGUG-GCa----CCG- -5'
18104 3' -58.3 NC_004680.1 + 57455 0.67 0.50187
Target:  5'- cCGCGCCGCCACC-CaAAcCACCGcugauguucUGGUg -3'
miRNA:   3'- -GUGCGGUGGUGGcGcUU-GUGGC---------ACCG- -5'
18104 3' -58.3 NC_004680.1 + 17290 0.67 0.50187
Target:  5'- uGCGCCA-CACCG-GGGCACCGUc-- -3'
miRNA:   3'- gUGCGGUgGUGGCgCUUGUGGCAccg -5'
18104 3' -58.3 NC_004680.1 + 36239 0.67 0.50187
Target:  5'- -uCGCCGCC-CUGCGGGCAUgggaugCGUccGGCg -3'
miRNA:   3'- guGCGGUGGuGGCGCUUGUG------GCA--CCG- -5'
18104 3' -58.3 NC_004680.1 + 20433 0.67 0.50187
Target:  5'- aACGCgAUCGCgGUGAACAuuuUCGUGGa -3'
miRNA:   3'- gUGCGgUGGUGgCGCUUGU---GGCACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.