miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18105 3' -51.6 NC_004680.1 + 31879 0.66 0.889691
Target:  5'- gGGGGAGugC-GCACCGG-AACCCu-- -3'
miRNA:   3'- -UCUCUUugGaCGUGGCUgUUGGGuuu -5'
18105 3' -51.6 NC_004680.1 + 3544 0.66 0.874022
Target:  5'- gAGcAGAuaacCCUGUucGCCGGCAAUCCGGu -3'
miRNA:   3'- -UC-UCUuu--GGACG--UGGCUGUUGGGUUu -5'
18105 3' -51.6 NC_004680.1 + 42438 0.66 0.86578
Target:  5'- cGAGAucguGGCCUGC-CCaAC-ACCCAAAg -3'
miRNA:   3'- uCUCU----UUGGACGuGGcUGuUGGGUUU- -5'
18105 3' -51.6 NC_004680.1 + 6114 0.66 0.86578
Target:  5'- --uGAcGACCUGCGCCcGC-ACCCGAGu -3'
miRNA:   3'- ucuCU-UUGGACGUGGcUGuUGGGUUU- -5'
18105 3' -51.6 NC_004680.1 + 55396 0.67 0.839512
Target:  5'- cAGGGcuGCC-GCACCucGACAcCCCAAAa -3'
miRNA:   3'- -UCUCuuUGGaCGUGG--CUGUuGGGUUU- -5'
18105 3' -51.6 NC_004680.1 + 28683 0.67 0.830273
Target:  5'- -----cGCCUGCACCGA--ACCCGGc -3'
miRNA:   3'- ucucuuUGGACGUGGCUguUGGGUUu -5'
18105 3' -51.6 NC_004680.1 + 11109 0.67 0.820809
Target:  5'- cGAcGggGCCgggGgGCCGGCuGGCCCGAu -3'
miRNA:   3'- uCU-CuuUGGa--CgUGGCUG-UUGGGUUu -5'
18105 3' -51.6 NC_004680.1 + 21695 0.67 0.811131
Target:  5'- cGAGAAcGCCUGCAgCGuCAcCCCGc- -3'
miRNA:   3'- uCUCUU-UGGACGUgGCuGUuGGGUuu -5'
18105 3' -51.6 NC_004680.1 + 19632 0.67 0.811131
Target:  5'- --cGAAACCUGUugGCCGA-GGCCCGGg -3'
miRNA:   3'- ucuCUUUGGACG--UGGCUgUUGGGUUu -5'
18105 3' -51.6 NC_004680.1 + 3879 0.68 0.800252
Target:  5'- uGGAGAccucgacGGCCUGCACCGGUGACUg--- -3'
miRNA:   3'- -UCUCU-------UUGGACGUGGCUGUUGGguuu -5'
18105 3' -51.6 NC_004680.1 + 755 0.68 0.770514
Target:  5'- cGAGAcgugcGGCCUGCcCCGACAgugAgCCAGGg -3'
miRNA:   3'- uCUCU-----UUGGACGuGGCUGU---UgGGUUU- -5'
18105 3' -51.6 NC_004680.1 + 52177 0.69 0.726336
Target:  5'- --cGAAGCCcucgccgcagagcUGCGCCGGCAAgCCGAc -3'
miRNA:   3'- ucuCUUUGG-------------ACGUGGCUGUUgGGUUu -5'
18105 3' -51.6 NC_004680.1 + 45000 0.69 0.71638
Target:  5'- uGGGGGAUCUGauCACCGACcuGGCCCGc- -3'
miRNA:   3'- uCUCUUUGGAC--GUGGCUG--UUGGGUuu -5'
18105 3' -51.6 NC_004680.1 + 48308 0.69 0.705232
Target:  5'- uAGAGGcuuCCgucGCGCCGGCGAgCCAAc -3'
miRNA:   3'- -UCUCUuu-GGa--CGUGGCUGUUgGGUUu -5'
18105 3' -51.6 NC_004680.1 + 652 0.7 0.671378
Target:  5'- aGGAGGGACUUGCAa-GACAGCCa--- -3'
miRNA:   3'- -UCUCUUUGGACGUggCUGUUGGguuu -5'
18105 3' -51.6 NC_004680.1 + 33576 0.7 0.647446
Target:  5'- uGGGGAAcuccucgGCCUGCGCuggcccuacguCGACAACCCc-- -3'
miRNA:   3'- -UCUCUU-------UGGACGUG-----------GCUGUUGGGuuu -5'
18105 3' -51.6 NC_004680.1 + 45136 0.7 0.637163
Target:  5'- gGGGGAAACCccGUgaACCGGCGGCUCAu- -3'
miRNA:   3'- -UCUCUUUGGa-CG--UGGCUGUUGGGUuu -5'
18105 3' -51.6 NC_004680.1 + 11337 0.71 0.625733
Target:  5'- cGGAGAAGCgUGC-CCGcGCcGCCCAGu -3'
miRNA:   3'- -UCUCUUUGgACGuGGC-UGuUGGGUUu -5'
18105 3' -51.6 NC_004680.1 + 55996 0.71 0.625733
Target:  5'- --cGAAACCgGCACCGAgAACgCAAAa -3'
miRNA:   3'- ucuCUUUGGaCGUGGCUgUUGgGUUU- -5'
18105 3' -51.6 NC_004680.1 + 14091 0.71 0.580178
Target:  5'- -aGGAAACCgGCACCGGuagugaacuCGGCCCGGAc -3'
miRNA:   3'- ucUCUUUGGaCGUGGCU---------GUUGGGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.