miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18105 5' -63.4 NC_004680.1 + 28163 0.66 0.312537
Target:  5'- gUUGUaucGGGCCugcauuuccgcgaccGCGGCGGUCAucUGCUCGu -3'
miRNA:   3'- uGACA---CCCGG---------------UGCCGCCGGU--ACGGGU- -5'
18105 5' -63.4 NC_004680.1 + 38576 0.67 0.286205
Target:  5'- uGCUGUGGuggauccguggcugGCCcgguuggaGCGGCaGGCCAUGUCgAa -3'
miRNA:   3'- -UGACACC--------------CGG--------UGCCG-CCGGUACGGgU- -5'
18105 5' -63.4 NC_004680.1 + 21945 0.67 0.268115
Target:  5'- --gGUGGG-CAUGGC-GCCGUGgCCCAc -3'
miRNA:   3'- ugaCACCCgGUGCCGcCGGUAC-GGGU- -5'
18105 5' -63.4 NC_004680.1 + 4850 0.67 0.268115
Target:  5'- cGCUGaaGGCCaaaACGGCaucgucGGCCGUGCCg- -3'
miRNA:   3'- -UGACacCCGG---UGCCG------CCGGUACGGgu -5'
18105 5' -63.4 NC_004680.1 + 18590 0.67 0.255318
Target:  5'- --gGUGGGCCugGuaGGCCuu-CCCGg -3'
miRNA:   3'- ugaCACCCGGugCcgCCGGuacGGGU- -5'
18105 5' -63.4 NC_004680.1 + 15610 0.67 0.255318
Target:  5'- cACUGUgcGGGCCACcauCGGCgaCGUGUCCAg -3'
miRNA:   3'- -UGACA--CCCGGUGcc-GCCG--GUACGGGU- -5'
18105 5' -63.4 NC_004680.1 + 11076 0.68 0.243027
Target:  5'- uGCUGccGGGCgGCcuugguGGCGGCCccggcGCCCAa -3'
miRNA:   3'- -UGACa-CCCGgUG------CCGCCGGua---CGGGU- -5'
18105 5' -63.4 NC_004680.1 + 11108 0.68 0.231232
Target:  5'- gACg--GGGCCGgGG-GGCCGgcugGCCCGa -3'
miRNA:   3'- -UGacaCCCGGUgCCgCCGGUa---CGGGU- -5'
18105 5' -63.4 NC_004680.1 + 12677 0.68 0.224953
Target:  5'- aGCUGaucaaccGGGCCaucgaguACGGCGGCCAggucGCCgCGa -3'
miRNA:   3'- -UGACa------CCCGG-------UGCCGCCGGUa---CGG-GU- -5'
18105 5' -63.4 NC_004680.1 + 58528 0.7 0.157447
Target:  5'- gGCgaugGUGuGGCCuuGGUGG-CGUGCCCAu -3'
miRNA:   3'- -UGa---CAC-CCGGugCCGCCgGUACGGGU- -5'
18105 5' -63.4 NC_004680.1 + 57491 0.71 0.145508
Target:  5'- aACUGcUGGGUUccaGGCGGCCGUcGUCCAc -3'
miRNA:   3'- -UGAC-ACCCGGug-CCGCCGGUA-CGGGU- -5'
18105 5' -63.4 NC_004680.1 + 42682 0.71 0.145508
Target:  5'- gUUGUGGGCUucgccGCGGCugauGCCGUGCCgCAc -3'
miRNA:   3'- uGACACCCGG-----UGCCGc---CGGUACGG-GU- -5'
18105 5' -63.4 NC_004680.1 + 28564 0.72 0.114496
Target:  5'- -gUGUGGGCCgaucACGGCGGCUc--CCCAa -3'
miRNA:   3'- ugACACCCGG----UGCCGCCGGuacGGGU- -5'
18105 5' -63.4 NC_004680.1 + 22031 1.07 0.000227
Target:  5'- gACUGUGGGCCACGGCGGCCAUGCCCAc -3'
miRNA:   3'- -UGACACCCGGUGCCGCCGGUACGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.