miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18106 5' -53.9 NC_004680.1 + 26914 0.66 0.819501
Target:  5'- cAGCaGCAACCCGGAcccaacggcgaACCcuGGGGGGCa- -3'
miRNA:   3'- -UUGcUGUUGGGCUU-----------UGG--CCCUCUGac -5'
18106 5' -53.9 NC_004680.1 + 57639 0.66 0.809141
Target:  5'- gAACGGCAccaccaaACCCGggGC--GGAGACa- -3'
miRNA:   3'- -UUGCUGU-------UGGGCuuUGgcCCUCUGac -5'
18106 5' -53.9 NC_004680.1 + 26181 0.66 0.800494
Target:  5'- uGGCGuucCAGCCggCGggGCCGcGGGACUGc -3'
miRNA:   3'- -UUGCu--GUUGG--GCuuUGGCcCUCUGAC- -5'
18106 5' -53.9 NC_004680.1 + 58338 0.66 0.790716
Target:  5'- cGCGGgGccguucucGCCCGAggUagaGGGAGACUa -3'
miRNA:   3'- uUGCUgU--------UGGGCUuuGg--CCCUCUGAc -5'
18106 5' -53.9 NC_004680.1 + 4659 0.66 0.774729
Target:  5'- cGGCGACGACCCGcugucccggaucgaaGAACUGGaacgaaaguucGAGACg- -3'
miRNA:   3'- -UUGCUGUUGGGC---------------UUUGGCC-----------CUCUGac -5'
18106 5' -53.9 NC_004680.1 + 33423 0.66 0.77067
Target:  5'- cAugGAcCAGCUCGGcgGugCGGGAGGCc- -3'
miRNA:   3'- -UugCU-GUUGGGCU--UugGCCCUCUGac -5'
18106 5' -53.9 NC_004680.1 + 37158 0.66 0.77067
Target:  5'- gGACGcCAACCUGGcggcugccAGCCGGGAGuggGg -3'
miRNA:   3'- -UUGCuGUUGGGCU--------UUGGCCCUCugaC- -5'
18106 5' -53.9 NC_004680.1 + 36480 0.66 0.77067
Target:  5'- cGCGGCAACCUcAGGCUuGGAuGGCUGa -3'
miRNA:   3'- uUGCUGUUGGGcUUUGGcCCU-CUGAC- -5'
18106 5' -53.9 NC_004680.1 + 36204 0.67 0.750045
Target:  5'- gAAUGGCGACUgGucACCGGuAGGCUGu -3'
miRNA:   3'- -UUGCUGUUGGgCuuUGGCCcUCUGAC- -5'
18106 5' -53.9 NC_004680.1 + 16786 0.67 0.728933
Target:  5'- --gGACGACCCGAcACCGGcGGAa-- -3'
miRNA:   3'- uugCUGUUGGGCUuUGGCCcUCUgac -5'
18106 5' -53.9 NC_004680.1 + 55153 0.68 0.704176
Target:  5'- aGACGcucacucaccguccACGACCCGGAACCGuGGAacgcuACUGa -3'
miRNA:   3'- -UUGC--------------UGUUGGGCUUUGGC-CCUc----UGAC- -5'
18106 5' -53.9 NC_004680.1 + 20089 0.68 0.696559
Target:  5'- cGGCGGCAACaCCG-GAUCGGGAuucaACUGa -3'
miRNA:   3'- -UUGCUGUUG-GGCuUUGGCCCUc---UGAC- -5'
18106 5' -53.9 NC_004680.1 + 21627 0.68 0.696559
Target:  5'- aGGCGuucuCGGC-CGggGCCGGGGGGgUGu -3'
miRNA:   3'- -UUGCu---GUUGgGCuuUGGCCCUCUgAC- -5'
18106 5' -53.9 NC_004680.1 + 11265 0.68 0.67464
Target:  5'- aGACGAUGAcCCCGAcgcGCCaGGAGGCg- -3'
miRNA:   3'- -UUGCUGUU-GGGCUu--UGGcCCUCUGac -5'
18106 5' -53.9 NC_004680.1 + 52201 0.68 0.663614
Target:  5'- -cCGGCAAgCCGAcgAGCCaGGAGGCg- -3'
miRNA:   3'- uuGCUGUUgGGCU--UUGGcCCUCUGac -5'
18106 5' -53.9 NC_004680.1 + 28120 0.69 0.6304
Target:  5'- cGCGACGGCCUGuacaucCCGGG-GAUUGu -3'
miRNA:   3'- uUGCUGUUGGGCuuu---GGCCCuCUGAC- -5'
18106 5' -53.9 NC_004680.1 + 21123 0.69 0.597197
Target:  5'- gGACGACcagccACCCGAgaacaAACCGGGAuGGCc- -3'
miRNA:   3'- -UUGCUGu----UGGGCU-----UUGGCCCU-CUGac -5'
18106 5' -53.9 NC_004680.1 + 21412 0.7 0.575197
Target:  5'- cGACGACGAUCCGGcgaaUGGGGGcCUGg -3'
miRNA:   3'- -UUGCUGUUGGGCUuug-GCCCUCuGAC- -5'
18106 5' -53.9 NC_004680.1 + 33309 0.7 0.568631
Target:  5'- gGAUGGCGGCCCGGuagucguugaggacGCCGGGgcGGACUu -3'
miRNA:   3'- -UUGCUGUUGGGCUu-------------UGGCCC--UCUGAc -5'
18106 5' -53.9 NC_004680.1 + 11125 0.7 0.553387
Target:  5'- cGACGGCGggagACaucgaCGggGCCGGGGGGCc- -3'
miRNA:   3'- -UUGCUGU----UGg----GCuuUGGCCCUCUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.