miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18108 3' -48.2 NC_004680.1 + 50336 0.66 0.983495
Target:  5'- --uUGGUaGC-GCGUCGAGuucUUCGACGg -3'
miRNA:   3'- uguACCAaUGaCGCAGCUU---GAGUUGC- -5'
18108 3' -48.2 NC_004680.1 + 56365 0.66 0.983495
Target:  5'- -gGUGGUUGCguuucGUGcCGAuGCUCAugGa -3'
miRNA:   3'- ugUACCAAUGa----CGCaGCU-UGAGUugC- -5'
18108 3' -48.2 NC_004680.1 + 9830 0.66 0.981275
Target:  5'- ---aGGgUGCUGCGUCGAagGCUgGcGCGg -3'
miRNA:   3'- uguaCCaAUGACGCAGCU--UGAgU-UGC- -5'
18108 3' -48.2 NC_004680.1 + 27377 0.66 0.981275
Target:  5'- -gGUGGUcgAUUGCGUCGAcAC-CGACc -3'
miRNA:   3'- ugUACCAa-UGACGCAGCU-UGaGUUGc -5'
18108 3' -48.2 NC_004680.1 + 19505 0.67 0.973273
Target:  5'- cAUGUGGUg---GCGUUGAACUUAcCGg -3'
miRNA:   3'- -UGUACCAaugaCGCAGCUUGAGUuGC- -5'
18108 3' -48.2 NC_004680.1 + 55589 0.68 0.959103
Target:  5'- uGCccGGUUGgUGCGUCGGcuGCUUgcuGGCGu -3'
miRNA:   3'- -UGuaCCAAUgACGCAGCU--UGAG---UUGC- -5'
18108 3' -48.2 NC_004680.1 + 27116 0.68 0.954879
Target:  5'- aGCcUGGUcggUGCUGCGaCGugccCUCAACGa -3'
miRNA:   3'- -UGuACCA---AUGACGCaGCuu--GAGUUGC- -5'
18108 3' -48.2 NC_004680.1 + 772 0.68 0.939943
Target:  5'- ---cGGUUcgagcggGCUgGCGUCGAACUCAGg- -3'
miRNA:   3'- uguaCCAA-------UGA-CGCAGCUUGAGUUgc -5'
18108 3' -48.2 NC_004680.1 + 21334 0.69 0.917083
Target:  5'- gGCGUGGg-ACcGCG-CGGGCUCAGCc -3'
miRNA:   3'- -UGUACCaaUGaCGCaGCUUGAGUUGc -5'
18108 3' -48.2 NC_004680.1 + 35481 0.7 0.896399
Target:  5'- ---aGG-UACUcGCGUCGGGCUCgGACGa -3'
miRNA:   3'- uguaCCaAUGA-CGCAGCUUGAG-UUGC- -5'
18108 3' -48.2 NC_004680.1 + 36226 0.71 0.864791
Target:  5'- gGCAUGGgaUGCguccgGCGUCGAAUggCGACu -3'
miRNA:   3'- -UGUACCa-AUGa----CGCAGCUUGa-GUUGc -5'
18108 3' -48.2 NC_004680.1 + 22494 1.11 0.004663
Target:  5'- gACAUGGUUACUGCGUCGAACUCAACGg -3'
miRNA:   3'- -UGUACCAAUGACGCAGCUUGAGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.