miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18108 5' -53.9 NC_004680.1 + 7517 0.66 0.85248
Target:  5'- gCCGcaccaaGUGGCCGUCGUCGUCa---- -3'
miRNA:   3'- gGGCaa----CACUGGUAGCGGCAGguacg -5'
18108 5' -53.9 NC_004680.1 + 57307 0.66 0.849115
Target:  5'- uCCCGUUccGUGACCGcgguaaggauccaCGCCGgCCG-GCg -3'
miRNA:   3'- -GGGCAA--CACUGGUa------------GCGGCaGGUaCG- -5'
18108 5' -53.9 NC_004680.1 + 42738 0.66 0.844
Target:  5'- cCCCGgucGUGGCUGggacCGCCGgcaGUGCg -3'
miRNA:   3'- -GGGCaa-CACUGGUa---GCGGCaggUACG- -5'
18108 5' -53.9 NC_004680.1 + 25949 0.66 0.844
Target:  5'- gCCGUgGUGACCAUCGaaGaCgAUGg -3'
miRNA:   3'- gGGCAaCACUGGUAGCggCaGgUACg -5'
18108 5' -53.9 NC_004680.1 + 32626 0.66 0.835302
Target:  5'- aCUGUggguaUGUcGAUCAUCGCCGUuggcgaCUAUGUg -3'
miRNA:   3'- gGGCA-----ACA-CUGGUAGCGGCA------GGUACG- -5'
18108 5' -53.9 NC_004680.1 + 28782 0.66 0.835302
Target:  5'- -gCGUUGcgGACCucuuguguGUCGCCGgguUCgGUGCa -3'
miRNA:   3'- ggGCAACa-CUGG--------UAGCGGC---AGgUACG- -5'
18108 5' -53.9 NC_004680.1 + 55864 0.66 0.826394
Target:  5'- gCCCGccGcGAcaaCCAUCGUCGUCCAa-- -3'
miRNA:   3'- -GGGCaaCaCU---GGUAGCGGCAGGUacg -5'
18108 5' -53.9 NC_004680.1 + 18042 0.66 0.817285
Target:  5'- gCCCGU----ACCAUCGCCG-CUgcgagaAUGCg -3'
miRNA:   3'- -GGGCAacacUGGUAGCGGCaGG------UACG- -5'
18108 5' -53.9 NC_004680.1 + 40123 0.66 0.807986
Target:  5'- uUCCGgUGUuagGGCCGUCGCC-UCCugGCg -3'
miRNA:   3'- -GGGCaACA---CUGGUAGCGGcAGGuaCG- -5'
18108 5' -53.9 NC_004680.1 + 15191 0.67 0.802319
Target:  5'- aCCCGcgGUuucgacgaugacaccGACCAUCGUCuuuuugcaGUCCAUGa -3'
miRNA:   3'- -GGGCaaCA---------------CUGGUAGCGG--------CAGGUACg -5'
18108 5' -53.9 NC_004680.1 + 46135 0.67 0.795627
Target:  5'- gCCUGUugUGUGAUCAUCcCCGcUCCAcccacacaccccaaUGCc -3'
miRNA:   3'- -GGGCA--ACACUGGUAGcGGC-AGGU--------------ACG- -5'
18108 5' -53.9 NC_004680.1 + 21644 0.67 0.788854
Target:  5'- gCCGggG-GGgUGUCGUCGUCCAaGCu -3'
miRNA:   3'- gGGCaaCaCUgGUAGCGGCAGGUaCG- -5'
18108 5' -53.9 NC_004680.1 + 28202 0.68 0.748756
Target:  5'- cCCCGggaUGUacaGGCCGUCGCgcaacaGUCC-UGCc -3'
miRNA:   3'- -GGGCa--ACA---CUGGUAGCGg-----CAGGuACG- -5'
18108 5' -53.9 NC_004680.1 + 2852 0.68 0.748756
Target:  5'- gCUGUaGUGACCGguUCGCCGccgCCGgugGUg -3'
miRNA:   3'- gGGCAaCACUGGU--AGCGGCa--GGUa--CG- -5'
18108 5' -53.9 NC_004680.1 + 45442 0.68 0.738414
Target:  5'- aUCCGguagGUGuuuCCGUCGUCGUCgA-GCa -3'
miRNA:   3'- -GGGCaa--CACu--GGUAGCGGCAGgUaCG- -5'
18108 5' -53.9 NC_004680.1 + 13941 0.68 0.738414
Target:  5'- gCCGUU---GCUGUCGCgGcCCAUGCg -3'
miRNA:   3'- gGGCAAcacUGGUAGCGgCaGGUACG- -5'
18108 5' -53.9 NC_004680.1 + 12731 0.68 0.737374
Target:  5'- cCCCGgucUGcgcggccUGACCAgCGCCGggugCCAUcGCg -3'
miRNA:   3'- -GGGCa--AC-------ACUGGUaGCGGCa---GGUA-CG- -5'
18108 5' -53.9 NC_004680.1 + 21563 0.68 0.714245
Target:  5'- gCCCGggccgGUGGCCucaucuggcgagcaaCGCCGgagccugcguucUCCAUGCg -3'
miRNA:   3'- -GGGCaa---CACUGGua-------------GCGGC------------AGGUACG- -5'
18108 5' -53.9 NC_004680.1 + 19228 0.68 0.706799
Target:  5'- gCCGUggGUGAgUAUCGCCGUggauacagguUCcgGCg -3'
miRNA:   3'- gGGCAa-CACUgGUAGCGGCA----------GGuaCG- -5'
18108 5' -53.9 NC_004680.1 + 28025 0.68 0.706799
Target:  5'- aCCCGgcccaaGACCAacauauUgGCCGUCgAUGCg -3'
miRNA:   3'- -GGGCaaca--CUGGU------AgCGGCAGgUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.