miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18111 5' -49.8 NC_004680.1 + 3643 0.66 0.963555
Target:  5'- --gGGAcGCUgcaCCGGauuGCCGGCGAACa -3'
miRNA:   3'- cagCUUuCGAa--GGCU---UGGCUGCUUGc -5'
18111 5' -49.8 NC_004680.1 + 49715 0.66 0.963555
Target:  5'- -cUGAAGuacgcGCUuggUCCGAAcCCGACGGACc -3'
miRNA:   3'- caGCUUU-----CGA---AGGCUU-GGCUGCUUGc -5'
18111 5' -49.8 NC_004680.1 + 7861 0.66 0.95973
Target:  5'- aUCGcGAAGCUUgCCGucCUGcGCGAACGg -3'
miRNA:   3'- cAGC-UUUCGAA-GGCuuGGC-UGCUUGC- -5'
18111 5' -49.8 NC_004680.1 + 52642 0.67 0.946628
Target:  5'- gGUCGAuGGCUUCaaaguGGACCGACuuGAUGu -3'
miRNA:   3'- -CAGCUuUCGAAGg----CUUGGCUGc-UUGC- -5'
18111 5' -49.8 NC_004680.1 + 17273 0.67 0.943706
Target:  5'- cGUCGGAuggguuugaucguguGGCggCCGGuacACCGGCGA-CGa -3'
miRNA:   3'- -CAGCUU---------------UCGaaGGCU---UGGCUGCUuGC- -5'
18111 5' -49.8 NC_004680.1 + 28441 0.67 0.930988
Target:  5'- -gCGGuaguGGUUUCCGAGCUGugGAu-- -3'
miRNA:   3'- caGCUu---UCGAAGGCUUGGCugCUugc -5'
18111 5' -49.8 NC_004680.1 + 467 0.67 0.930988
Target:  5'- uUCGAAGGCUaaggggUCGAAgCGGCGGAa- -3'
miRNA:   3'- cAGCUUUCGAa-----GGCUUgGCUGCUUgc -5'
18111 5' -49.8 NC_004680.1 + 36614 0.68 0.90542
Target:  5'- cUCGAcagcgacGAGCUUgCGAGCgguguCGGCGAACa -3'
miRNA:   3'- cAGCU-------UUCGAAgGCUUG-----GCUGCUUGc -5'
18111 5' -49.8 NC_004680.1 + 51789 0.7 0.843073
Target:  5'- aUCGgcAGCUaguUCaCGAGCCGAUGcGGCGg -3'
miRNA:   3'- cAGCuuUCGA---AG-GCUUGGCUGC-UUGC- -5'
18111 5' -49.8 NC_004680.1 + 23265 0.71 0.765408
Target:  5'- uUCGGAAGCUUUCGA--CGACGGugACGu -3'
miRNA:   3'- cAGCUUUCGAAGGCUugGCUGCU--UGC- -5'
18111 5' -49.8 NC_004680.1 + 31181 0.72 0.744326
Target:  5'- uGUCGGAGGCUUCUGAcuguagACaUGACGAAa- -3'
miRNA:   3'- -CAGCUUUCGAAGGCU------UG-GCUGCUUgc -5'
18111 5' -49.8 NC_004680.1 + 52188 0.74 0.644982
Target:  5'- -cCGcAGAGCUgcgCCGGcaaGCCGACGAGCc -3'
miRNA:   3'- caGC-UUUCGAa--GGCU---UGGCUGCUUGc -5'
18111 5' -49.8 NC_004680.1 + 48313 0.75 0.588807
Target:  5'- -aCGuguaGAGGCUUCCGucgcGCCGGCGAGCc -3'
miRNA:   3'- caGC----UUUCGAAGGCu---UGGCUGCUUGc -5'
18111 5' -49.8 NC_004680.1 + 44536 0.78 0.39161
Target:  5'- gGUgGAAAGaagUCCGAcCCGACGAACGc -3'
miRNA:   3'- -CAgCUUUCga-AGGCUuGGCUGCUUGC- -5'
18111 5' -49.8 NC_004680.1 + 23340 1.1 0.004324
Target:  5'- cGUCGAAAGCUUCCGAACCGACGAACGu -3'
miRNA:   3'- -CAGCUUUCGAAGGCUUGGCUGCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.