miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18112 3' -60.6 NC_004680.1 + 43021 0.66 0.470221
Target:  5'- -cGGCGGCCUGUcCGA---GCGUgaacGCCg -3'
miRNA:   3'- gcCCGCCGGACGuGCUaguCGCA----CGG- -5'
18112 3' -60.6 NC_004680.1 + 57713 0.66 0.470221
Target:  5'- uGGGCGGCUgcggGUuCGAgUCGGUGUuCCc -3'
miRNA:   3'- gCCCGCCGGa---CGuGCU-AGUCGCAcGG- -5'
18112 3' -60.6 NC_004680.1 + 42287 0.66 0.469255
Target:  5'- aCGGuGCGGUgguggcagcccagCUGUucgGCGAUCuGCGUGgCg -3'
miRNA:   3'- -GCC-CGCCG-------------GACG---UGCUAGuCGCACgG- -5'
18112 3' -60.6 NC_004680.1 + 52684 0.66 0.460618
Target:  5'- --uGCGGCCgucgGCAaGAUgCAGCGUGgCa -3'
miRNA:   3'- gccCGCCGGa---CGUgCUA-GUCGCACgG- -5'
18112 3' -60.6 NC_004680.1 + 29061 0.66 0.451119
Target:  5'- uGGGCgaacgugcgGGCC-GCGCGuUCGGCG-GCg -3'
miRNA:   3'- gCCCG---------CCGGaCGUGCuAGUCGCaCGg -5'
18112 3' -60.6 NC_004680.1 + 11081 0.66 0.451119
Target:  5'- cCGGGCGGCCU---UGGU-GGCG-GCCc -3'
miRNA:   3'- -GCCCGCCGGAcguGCUAgUCGCaCGG- -5'
18112 3' -60.6 NC_004680.1 + 39373 0.66 0.44173
Target:  5'- aGGGCGGCCaGUG-----GGCGUGCUg -3'
miRNA:   3'- gCCCGCCGGaCGUgcuagUCGCACGG- -5'
18112 3' -60.6 NC_004680.1 + 51605 0.67 0.423288
Target:  5'- uGGGCGGCgUGCgccuugGCGAUCcGCucauccucGCCg -3'
miRNA:   3'- gCCCGCCGgACG------UGCUAGuCGca------CGG- -5'
18112 3' -60.6 NC_004680.1 + 11676 0.67 0.423288
Target:  5'- aGGGCGGCCacgGUuuGAUgGGUGU-CCu -3'
miRNA:   3'- gCCCGCCGGa--CGugCUAgUCGCAcGG- -5'
18112 3' -60.6 NC_004680.1 + 9586 0.67 0.396511
Target:  5'- uCGGcuGCuGGCC-GCGCGAUCGGCGagaacGUCa -3'
miRNA:   3'- -GCC--CG-CCGGaCGUGCUAGUCGCa----CGG- -5'
18112 3' -60.6 NC_004680.1 + 21488 0.67 0.387831
Target:  5'- aGGGCcaccGGCCcggGCugGGUgAGUGcguaUGCCa -3'
miRNA:   3'- gCCCG----CCGGa--CGugCUAgUCGC----ACGG- -5'
18112 3' -60.6 NC_004680.1 + 3150 0.67 0.379277
Target:  5'- cCGGcGCGGCCUcaaagaucgagGCGuaguCGAUC-GCGUuGCCg -3'
miRNA:   3'- -GCC-CGCCGGA-----------CGU----GCUAGuCGCA-CGG- -5'
18112 3' -60.6 NC_004680.1 + 12702 0.67 0.379277
Target:  5'- -cGGCGGCCagGUcgccGCGAUCGGCGc-CCa -3'
miRNA:   3'- gcCCGCCGGa-CG----UGCUAGUCGCacGG- -5'
18112 3' -60.6 NC_004680.1 + 53974 0.68 0.37085
Target:  5'- uCGGGCGGCCagaugUGCggcacACGAggCAG-GUGCa -3'
miRNA:   3'- -GCCCGCCGG-----ACG-----UGCUa-GUCgCACGg -5'
18112 3' -60.6 NC_004680.1 + 57527 0.68 0.37085
Target:  5'- uGGGUGGCg-GCGCGGUUguaGGCGgcGCUg -3'
miRNA:   3'- gCCCGCCGgaCGUGCUAG---UCGCa-CGG- -5'
18112 3' -60.6 NC_004680.1 + 56057 0.68 0.362552
Target:  5'- uCGGuGCGGCUgggcagcGUugGAUCGGCGUaGUUc -3'
miRNA:   3'- -GCC-CGCCGGa------CGugCUAGUCGCA-CGG- -5'
18112 3' -60.6 NC_004680.1 + 35963 0.68 0.354384
Target:  5'- uGGGCGGCUUcGCGucCGAUCGGCcuuCCu -3'
miRNA:   3'- gCCCGCCGGA-CGU--GCUAGUCGcacGG- -5'
18112 3' -60.6 NC_004680.1 + 46092 0.68 0.33844
Target:  5'- gGGGCGGCCUuggGUGCGGgcgcauUCGGCGcaaGCa -3'
miRNA:   3'- gCCCGCCGGA---CGUGCU------AGUCGCa--CGg -5'
18112 3' -60.6 NC_004680.1 + 13144 0.69 0.323024
Target:  5'- uGGGCGGCCUG-GCGGUCcccgacCGgaccGCCg -3'
miRNA:   3'- gCCCGCCGGACgUGCUAGuc----GCa---CGG- -5'
18112 3' -60.6 NC_004680.1 + 7677 0.69 0.323024
Target:  5'- gCGuGGCGGCCUGCagGCGGuguUCAuccGCGacaaccguggUGCCg -3'
miRNA:   3'- -GC-CCGCCGGACG--UGCU---AGU---CGC----------ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.