miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18114 3' -48.4 NC_004680.1 + 2413 0.66 0.983188
Target:  5'- gGGUuuGAUGGuGCGGGAuUCuGUUGCUg -3'
miRNA:   3'- aCUAggCUGUC-CGCUCUuAG-UAAUGG- -5'
18114 3' -48.4 NC_004680.1 + 58401 0.66 0.980948
Target:  5'- gGcgCCGGCAGGUGAGc--CAguggGCUg -3'
miRNA:   3'- aCuaGGCUGUCCGCUCuuaGUaa--UGG- -5'
18114 3' -48.4 NC_004680.1 + 2687 0.66 0.980948
Target:  5'- aGGUCCGcuaugcgguGguGGCGGGAccUCGaUGCCg -3'
miRNA:   3'- aCUAGGC---------UguCCGCUCUu-AGUaAUGG- -5'
18114 3' -48.4 NC_004680.1 + 10558 0.67 0.972889
Target:  5'- aUGAUgUGAac-GCGuGGAUCGUUGCCc -3'
miRNA:   3'- -ACUAgGCUgucCGCuCUUAGUAAUGG- -5'
18114 3' -48.4 NC_004680.1 + 5614 0.67 0.969723
Target:  5'- cUGGUCUG-CGGGCGGGcaccAUCGggaACCu -3'
miRNA:   3'- -ACUAGGCuGUCCGCUCu---UAGUaa-UGG- -5'
18114 3' -48.4 NC_004680.1 + 57246 0.67 0.969723
Target:  5'- cGuUCuCGGCGGcGCcgGGGAAUCcgUGCCa -3'
miRNA:   3'- aCuAG-GCUGUC-CG--CUCUUAGuaAUGG- -5'
18114 3' -48.4 NC_004680.1 + 18862 0.67 0.966301
Target:  5'- gGAUCggcuaCGGCGuGGCGGGGAUC---ACCg -3'
miRNA:   3'- aCUAG-----GCUGU-CCGCUCUUAGuaaUGG- -5'
18114 3' -48.4 NC_004680.1 + 16789 0.67 0.958658
Target:  5'- cGAcCCGACAccGGCG-GAagcGUCGUUcACCg -3'
miRNA:   3'- aCUaGGCUGU--CCGCuCU---UAGUAA-UGG- -5'
18114 3' -48.4 NC_004680.1 + 17973 0.7 0.903138
Target:  5'- aUGGUaCgGGCGcGGCGAaAGUUAUUGCCg -3'
miRNA:   3'- -ACUA-GgCUGU-CCGCUcUUAGUAAUGG- -5'
18114 3' -48.4 NC_004680.1 + 43383 0.7 0.87273
Target:  5'- cUGAUucgugCCGGCAGGCGGcGAUCcUUGCg -3'
miRNA:   3'- -ACUA-----GGCUGUCCGCUcUUAGuAAUGg -5'
18114 3' -48.4 NC_004680.1 + 41825 0.72 0.807554
Target:  5'- aGAUgCGGCGGGCG-GggUCGgcgguguagugGCCg -3'
miRNA:   3'- aCUAgGCUGUCCGCuCuuAGUaa---------UGG- -5'
18114 3' -48.4 NC_004680.1 + 57411 0.72 0.789494
Target:  5'- aGGUucgCCGGCcGGCGuGGAUCcUUACCg -3'
miRNA:   3'- aCUA---GGCUGuCCGCuCUUAGuAAUGG- -5'
18114 3' -48.4 NC_004680.1 + 46546 0.73 0.768757
Target:  5'- aGAUCCG-CAGGUGGGA--CAUU-CCa -3'
miRNA:   3'- aCUAGGCuGUCCGCUCUuaGUAAuGG- -5'
18114 3' -48.4 NC_004680.1 + 36128 0.73 0.768757
Target:  5'- ---cCCGACAGGCGGGggUUuuUUAUg -3'
miRNA:   3'- acuaGGCUGUCCGCUCuuAGu-AAUGg -5'
18114 3' -48.4 NC_004680.1 + 1811 0.73 0.768757
Target:  5'- cGAUCCGugGGGCuGGGAuUCGacgaucGCCg -3'
miRNA:   3'- aCUAGGCugUCCG-CUCUuAGUaa----UGG- -5'
18114 3' -48.4 NC_004680.1 + 24095 1.14 0.002737
Target:  5'- cUGAUCCGACAGGCGAGAAUCAUUACCg -3'
miRNA:   3'- -ACUAGGCUGUCCGCUCUUAGUAAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.