miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18115 3' -59.9 NC_004680.1 + 16684 0.66 0.53539
Target:  5'- gCCGCAgGgCGGUauCGGUGuuGGugUg -3'
miRNA:   3'- -GGUGUaCgGCCAgcGCCACggCCugA- -5'
18115 3' -59.9 NC_004680.1 + 24020 0.66 0.515144
Target:  5'- cUCGCcUGUCGGaUCaGCgGGUGCCGGuCg -3'
miRNA:   3'- -GGUGuACGGCC-AG-CG-CCACGGCCuGa -5'
18115 3' -59.9 NC_004680.1 + 27463 0.66 0.505138
Target:  5'- cCCGCGcUGCCuGGUCGCGGgaucagUGGAUg -3'
miRNA:   3'- -GGUGU-ACGG-CCAGCGCCacg---GCCUGa -5'
18115 3' -59.9 NC_004680.1 + 56886 0.66 0.495216
Target:  5'- aCACAUGCCGGUCauCGG-GUuuGACUc -3'
miRNA:   3'- gGUGUACGGCCAGc-GCCaCGgcCUGA- -5'
18115 3' -59.9 NC_004680.1 + 5173 0.67 0.475644
Target:  5'- uCCACAUcGCUGG-CGUGGUGgCaccuaccgucaaGGACUa -3'
miRNA:   3'- -GGUGUA-CGGCCaGCGCCACgG------------CCUGA- -5'
18115 3' -59.9 NC_004680.1 + 56067 0.67 0.475644
Target:  5'- ---gGUGCCGGUUuCGGUgcgGCUGGGCa -3'
miRNA:   3'- ggugUACGGCCAGcGCCA---CGGCCUGa -5'
18115 3' -59.9 NC_004680.1 + 34880 0.67 0.456466
Target:  5'- aCGCAU-CCGGUUGCgaggGGUGaCCGGuGCUg -3'
miRNA:   3'- gGUGUAcGGCCAGCG----CCAC-GGCC-UGA- -5'
18115 3' -59.9 NC_004680.1 + 9981 0.68 0.409538
Target:  5'- aCCGCAgcaacgccgaugaUGCCuGUCGCGGcgGCCGuGAa- -3'
miRNA:   3'- -GGUGU-------------ACGGcCAGCGCCa-CGGC-CUga -5'
18115 3' -59.9 NC_004680.1 + 9236 0.68 0.384229
Target:  5'- gCGCGUGCUGuUCGCGGgggccGCUGGuCUg -3'
miRNA:   3'- gGUGUACGGCcAGCGCCa----CGGCCuGA- -5'
18115 3' -59.9 NC_004680.1 + 43559 0.68 0.384229
Target:  5'- cCCACGUGUa----GCGGUGCCaGGACc -3'
miRNA:   3'- -GGUGUACGgccagCGCCACGG-CCUGa -5'
18115 3' -59.9 NC_004680.1 + 58746 0.68 0.375746
Target:  5'- gCUACggGuuGGggagcCGCGGUcGCCGGAUa -3'
miRNA:   3'- -GGUGuaCggCCa----GCGCCA-CGGCCUGa -5'
18115 3' -59.9 NC_004680.1 + 28182 0.68 0.375746
Target:  5'- uCCGCG-GCCGGUCGUGGacacCCGGcccguGCUg -3'
miRNA:   3'- -GGUGUaCGGCCAGCGCCac--GGCC-----UGA- -5'
18115 3' -59.9 NC_004680.1 + 48420 0.69 0.36739
Target:  5'- uCCGCGUGuCCuGGagGCGGUGUCGuGCa -3'
miRNA:   3'- -GGUGUAC-GG-CCagCGCCACGGCcUGa -5'
18115 3' -59.9 NC_004680.1 + 59038 0.69 0.359162
Target:  5'- gCAUGUGCCGGUUGUGGUGagugUGGuGCa -3'
miRNA:   3'- gGUGUACGGCCAGCGCCACg---GCC-UGa -5'
18115 3' -59.9 NC_004680.1 + 27942 0.69 0.351064
Target:  5'- gCCAUAUGuuGGUCuuGG-GCCGGGu- -3'
miRNA:   3'- -GGUGUACggCCAGcgCCaCGGCCUga -5'
18115 3' -59.9 NC_004680.1 + 12363 0.7 0.319983
Target:  5'- gUCugGUGCUGG-CGCGGguccacUGCCGGGu- -3'
miRNA:   3'- -GGugUACGGCCaGCGCC------ACGGCCUga -5'
18115 3' -59.9 NC_004680.1 + 29686 0.72 0.22199
Target:  5'- aUCACAUGCUGGgca-GGUGCgGGGCUc -3'
miRNA:   3'- -GGUGUACGGCCagcgCCACGgCCUGA- -5'
18115 3' -59.9 NC_004680.1 + 24273 1.08 0.000533
Target:  5'- uCCACAUGCCGGUCGCGGUGCCGGACUu -3'
miRNA:   3'- -GGUGUACGGCCAGCGCCACGGCCUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.