miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18115 5' -55.4 NC_004680.1 + 40679 0.66 0.714544
Target:  5'- --cGCacgUCGAgGcGCGggGCuCUGCGCa -3'
miRNA:   3'- aguCGga-AGCUgU-CGCuuCG-GACGUG- -5'
18115 5' -55.4 NC_004680.1 + 7353 0.66 0.703706
Target:  5'- gCGGCCUcaUCagacGCGGCGAAcGUgUGCACc -3'
miRNA:   3'- aGUCGGA--AGc---UGUCGCUU-CGgACGUG- -5'
18115 5' -55.4 NC_004680.1 + 14519 0.66 0.703706
Target:  5'- uUCAGCUccugcggCGACGGCGGcacAGacgucaaauCCUGCACc -3'
miRNA:   3'- -AGUCGGaa-----GCUGUCGCU---UC---------GGACGUG- -5'
18115 5' -55.4 NC_004680.1 + 49137 0.66 0.692797
Target:  5'- -aAGCCg-CGACGGCGAGGUcgcuaaaugcuCUGCGu -3'
miRNA:   3'- agUCGGaaGCUGUCGCUUCG-----------GACGUg -5'
18115 5' -55.4 NC_004680.1 + 12511 0.66 0.692797
Target:  5'- cCGGUggUgGGCAGCGggGCUggguuagGCGCc -3'
miRNA:   3'- aGUCGgaAgCUGUCGCuuCGGa------CGUG- -5'
18115 5' -55.4 NC_004680.1 + 10928 0.66 0.681829
Target:  5'- gUCAGCCacagCGgcACAGCGAuccucgacAGUgCUGCACu -3'
miRNA:   3'- -AGUCGGaa--GC--UGUCGCU--------UCG-GACGUG- -5'
18115 5' -55.4 NC_004680.1 + 2988 0.66 0.68073
Target:  5'- -aGGCUUUCGGCAGCGGgcguugaAGUCgucggaGCAUa -3'
miRNA:   3'- agUCGGAAGCUGUCGCU-------UCGGa-----CGUG- -5'
18115 5' -55.4 NC_004680.1 + 21591 0.66 0.68073
Target:  5'- gUCAGCCggUGACcguuucgAGCGggGUgacgCUGCAg -3'
miRNA:   3'- -AGUCGGaaGCUG-------UCGCuuCG----GACGUg -5'
18115 5' -55.4 NC_004680.1 + 41438 0.66 0.659759
Target:  5'- gUCAGCUUcagCGugugguGCGGCGAGGCCgggGC-Cg -3'
miRNA:   3'- -AGUCGGAa--GC------UGUCGCUUCGGa--CGuG- -5'
18115 5' -55.4 NC_004680.1 + 42601 0.66 0.659759
Target:  5'- aUCAGCC----GCGGCGAAGCC--CACa -3'
miRNA:   3'- -AGUCGGaagcUGUCGCUUCGGacGUG- -5'
18115 5' -55.4 NC_004680.1 + 43138 0.67 0.648679
Target:  5'- cUCGuUCUUCu-CGGCG-AGCCUGCACc -3'
miRNA:   3'- -AGUcGGAAGcuGUCGCuUCGGACGUG- -5'
18115 5' -55.4 NC_004680.1 + 31926 0.67 0.626484
Target:  5'- cUCAGCCggggUCGGugUGGCgGAGGCUUGC-Cg -3'
miRNA:   3'- -AGUCGGa---AGCU--GUCG-CUUCGGACGuG- -5'
18115 5' -55.4 NC_004680.1 + 747 0.68 0.593253
Target:  5'- gCGGCCUgcccCGACAGUG-AGCCaGgGCc -3'
miRNA:   3'- aGUCGGAa---GCUGUCGCuUCGGaCgUG- -5'
18115 5' -55.4 NC_004680.1 + 21352 0.68 0.592149
Target:  5'- cUCAGCCccgUCGGCcacguauGGCGgcGCCgGCGg -3'
miRNA:   3'- -AGUCGGa--AGCUG-------UCGCuuCGGaCGUg -5'
18115 5' -55.4 NC_004680.1 + 12960 0.68 0.538645
Target:  5'- -uGGCCUUgGGCGGCG--GCUUGCGg -3'
miRNA:   3'- agUCGGAAgCUGUCGCuuCGGACGUg -5'
18115 5' -55.4 NC_004680.1 + 45353 0.69 0.527913
Target:  5'- -aAGCCaccCGuCAGCGAAcGCUUGCGCc -3'
miRNA:   3'- agUCGGaa-GCuGUCGCUU-CGGACGUG- -5'
18115 5' -55.4 NC_004680.1 + 6387 0.69 0.527913
Target:  5'- aCGGCCcugcCGuCAGCGAuaccGCCUGCGa -3'
miRNA:   3'- aGUCGGaa--GCuGUCGCUu---CGGACGUg -5'
18115 5' -55.4 NC_004680.1 + 3299 0.69 0.517262
Target:  5'- aUCGGUUgUCGAUAGCGAagaucGGCCUGgAg -3'
miRNA:   3'- -AGUCGGaAGCUGUCGCU-----UCGGACgUg -5'
18115 5' -55.4 NC_004680.1 + 36677 0.69 0.493105
Target:  5'- cUCAGCCUUCGcaacCAGCGggGCgUcccguucgaucgccGCAg -3'
miRNA:   3'- -AGUCGGAAGCu---GUCGCuuCGgA--------------CGUg -5'
18115 5' -55.4 NC_004680.1 + 12906 0.7 0.475588
Target:  5'- cCAGCCaggUUCGGCAacGCgGGAGCC-GCACc -3'
miRNA:   3'- aGUCGG---AAGCUGU--CG-CUUCGGaCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.