Results 1 - 5 of 5 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18120 | 3' | -52.5 | NC_004680.1 | + | 7759 | 0.67 | 0.811952 |
Target: 5'- --aCGGUGAAGUGGUCgCCguucGCGcaGGACg -3' miRNA: 3'- caaGCCACUUCAUCAG-GG----UGCc-CUUG- -5' |
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18120 | 3' | -52.5 | NC_004680.1 | + | 23977 | 0.67 | 0.811952 |
Target: 5'- --cCGGUGGgcaguAGUGGUUCCACGGu--- -3' miRNA: 3'- caaGCCACU-----UCAUCAGGGUGCCcuug -5' |
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18120 | 3' | -52.5 | NC_004680.1 | + | 41971 | 0.68 | 0.75159 |
Target: 5'- -cUCGGUGAAccGUgccGGUUUCAcCGGGGGCa -3' miRNA: 3'- caAGCCACUU--CA---UCAGGGU-GCCCUUG- -5' |
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18120 | 3' | -52.5 | NC_004680.1 | + | 30939 | 0.68 | 0.741022 |
Target: 5'- -gUCGGUGuggcuGGcGGUCgUCGCGGGGAUg -3' miRNA: 3'- caAGCCACu----UCaUCAG-GGUGCCCUUG- -5' |
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18120 | 3' | -52.5 | NC_004680.1 | + | 27755 | 1.09 | 0.00203 |
Target: 5'- cGUUCGGUGAAGUAGUCCCACGGGAACc -3' miRNA: 3'- -CAAGCCACUUCAUCAGGGUGCCCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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