miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18121 3' -56.8 NC_004680.1 + 56891 0.66 0.695315
Target:  5'- gCCGGuGggGuUCAGGCUGagggCGUGCuGCa -3'
miRNA:   3'- -GGCC-CuaCuAGUCCGGCa---GCGCGuUG- -5'
18121 3' -56.8 NC_004680.1 + 5855 0.66 0.695315
Target:  5'- gCGcGGAUacGGUCAGagaaGCUguccugGUCGCGCAGCg -3'
miRNA:   3'- gGC-CCUA--CUAGUC----CGG------CAGCGCGUUG- -5'
18121 3' -56.8 NC_004680.1 + 10004 0.66 0.695315
Target:  5'- -gGGGAccGGUCGGGCCGgcaUCGaCGUcGCu -3'
miRNA:   3'- ggCCCUa-CUAGUCCGGC---AGC-GCGuUG- -5'
18121 3' -56.8 NC_004680.1 + 22677 0.66 0.695315
Target:  5'- uUCGGG-UGGguggGGGCCGUCGcCGCc-- -3'
miRNA:   3'- -GGCCCuACUag--UCCGGCAGC-GCGuug -5'
18121 3' -56.8 NC_004680.1 + 48344 0.66 0.682549
Target:  5'- uCCGGGGUGAaCacguuccacauacggAGGuacguguagaggcuuCCGUCGCGcCGGCg -3'
miRNA:   3'- -GGCCCUACUaG---------------UCC---------------GGCAGCGC-GUUG- -5'
18121 3' -56.8 NC_004680.1 + 47214 0.66 0.652536
Target:  5'- uCCGGGcgGUGGcUCGGGCgGaaGCGgGACu -3'
miRNA:   3'- -GGCCC--UACU-AGUCCGgCagCGCgUUG- -5'
18121 3' -56.8 NC_004680.1 + 14135 0.66 0.641772
Target:  5'- aUCGGGuuUGGUaugCAGGCCGgUgGCGCGu- -3'
miRNA:   3'- -GGCCCu-ACUA---GUCCGGC-AgCGCGUug -5'
18121 3' -56.8 NC_004680.1 + 54692 0.66 0.641772
Target:  5'- uCCGGGgcGuUCGGGCUGaCGUGUuuCa -3'
miRNA:   3'- -GGCCCuaCuAGUCCGGCaGCGCGuuG- -5'
18121 3' -56.8 NC_004680.1 + 19651 0.66 0.63854
Target:  5'- cCCGGGcacguucacauucaAUGAUCAGGacuaCGUgG-GCGGCg -3'
miRNA:   3'- -GGCCC--------------UACUAGUCCg---GCAgCgCGUUG- -5'
18121 3' -56.8 NC_004680.1 + 57795 0.67 0.620227
Target:  5'- uUGGccGAUGAgguUCAGGCUuUCGCGgGACa -3'
miRNA:   3'- gGCC--CUACU---AGUCCGGcAGCGCgUUG- -5'
18121 3' -56.8 NC_004680.1 + 48410 0.67 0.588005
Target:  5'- gCGcGGAUGAUCcgcguguccuggAGGCggUGUCGUGCAGg -3'
miRNA:   3'- gGC-CCUACUAG------------UCCG--GCAGCGCGUUg -5'
18121 3' -56.8 NC_004680.1 + 44655 0.67 0.577325
Target:  5'- gCCGGGAUagGAcacCAGGgCGUCGaucauGCGGCg -3'
miRNA:   3'- -GGCCCUA--CUa--GUCCgGCAGCg----CGUUG- -5'
18121 3' -56.8 NC_004680.1 + 55363 0.68 0.556102
Target:  5'- gCCGGGGUGAacCAGGuuGUUcaGCGUcuCg -3'
miRNA:   3'- -GGCCCUACUa-GUCCggCAG--CGCGuuG- -5'
18121 3' -56.8 NC_004680.1 + 12643 0.68 0.524718
Target:  5'- cCCGGcGcUGGUCAGGCCG-CGCa---- -3'
miRNA:   3'- -GGCC-CuACUAGUCCGGCaGCGcguug -5'
18121 3' -56.8 NC_004680.1 + 12955 0.69 0.514404
Target:  5'- aCCGaGGAcgGAaCAGGCCGgacgUCGCGUAu- -3'
miRNA:   3'- -GGC-CCUa-CUaGUCCGGC----AGCGCGUug -5'
18121 3' -56.8 NC_004680.1 + 28828 0.69 0.504173
Target:  5'- aUCGGGuccgGUGAaCAGGUCcagGUCGCGCAc- -3'
miRNA:   3'- -GGCCC----UACUaGUCCGG---CAGCGCGUug -5'
18121 3' -56.8 NC_004680.1 + 26528 0.7 0.435318
Target:  5'- uCCGauuuGGAUGAUCAGaUCGUCGCGaAACu -3'
miRNA:   3'- -GGC----CCUACUAGUCcGGCAGCGCgUUG- -5'
18121 3' -56.8 NC_004680.1 + 34014 0.71 0.375652
Target:  5'- gCUGGGGUGAUCGGuccaaccgagucguuGCCGcCGCaCAACu -3'
miRNA:   3'- -GGCCCUACUAGUC---------------CGGCaGCGcGUUG- -5'
18121 3' -56.8 NC_004680.1 + 4739 0.71 0.372217
Target:  5'- uCCGGGAcag-CGGGUCGUCGCcgauuuuuuccuGCGACu -3'
miRNA:   3'- -GGCCCUacuaGUCCGGCAGCG------------CGUUG- -5'
18121 3' -56.8 NC_004680.1 + 28201 0.98 0.005414
Target:  5'- cCCGGGAUGuaCAGGCCGUCGCGCAACa -3'
miRNA:   3'- -GGCCCUACuaGUCCGGCAGCGCGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.