miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18124 3' -58.5 NC_004680.1 + 56816 0.66 0.572432
Target:  5'- gUCCUGCUUgGGuuGcGCGuCCAACCa- -3'
miRNA:   3'- -AGGACGAAgCUggCcCGU-GGUUGGgu -5'
18124 3' -58.5 NC_004680.1 + 31813 0.66 0.57137
Target:  5'- aUCCcccagUGCUUCGGCCugaucGGCaagccuccgccacACCGACCCc -3'
miRNA:   3'- -AGG-----ACGAAGCUGGc----CCG-------------UGGUUGGGu -5'
18124 3' -58.5 NC_004680.1 + 17014 0.66 0.5513
Target:  5'- aCCUGCcccgCGACUGGGgACgGGUCCAc -3'
miRNA:   3'- aGGACGaa--GCUGGCCCgUGgUUGGGU- -5'
18124 3' -58.5 NC_004680.1 + 24189 0.66 0.530413
Target:  5'- gUCCgGCaccgCGACCggcauguggauGGGCACC-ACCCu -3'
miRNA:   3'- -AGGaCGaa--GCUGG-----------CCCGUGGuUGGGu -5'
18124 3' -58.5 NC_004680.1 + 58658 0.67 0.489571
Target:  5'- aUCCgg---CGACCGcGGCuccCCAACCCGu -3'
miRNA:   3'- -AGGacgaaGCUGGC-CCGu--GGUUGGGU- -5'
18124 3' -58.5 NC_004680.1 + 48484 0.67 0.489571
Target:  5'- cCCUGCagcaacacgaUUCGuCCGGGgaaGCCGcuGCCCGg -3'
miRNA:   3'- aGGACG----------AAGCuGGCCCg--UGGU--UGGGU- -5'
18124 3' -58.5 NC_004680.1 + 11179 0.67 0.469705
Target:  5'- gUUCUGCUUgGgcGCCGGGgcCGCCAccaaggccGCCCGg -3'
miRNA:   3'- -AGGACGAAgC--UGGCCC--GUGGU--------UGGGU- -5'
18124 3' -58.5 NC_004680.1 + 33919 0.67 0.469705
Target:  5'- gUCC-GuCUUCGGCCGGGUGaacaacaaCGACCCc -3'
miRNA:   3'- -AGGaC-GAAGCUGGCCCGUg-------GUUGGGu -5'
18124 3' -58.5 NC_004680.1 + 37957 0.68 0.449298
Target:  5'- gUCUGCgggCGGCCaucgaacgggcucGGGCGCUAGCCgAg -3'
miRNA:   3'- aGGACGaa-GCUGG-------------CCCGUGGUUGGgU- -5'
18124 3' -58.5 NC_004680.1 + 5610 0.68 0.431264
Target:  5'- -gCUGCUggucugCGGgCGGGCACCAucgggaACCUg -3'
miRNA:   3'- agGACGAa-----GCUgGCCCGUGGU------UGGGu -5'
18124 3' -58.5 NC_004680.1 + 30710 0.69 0.403673
Target:  5'- aUCCUGU-----CCGGGCugCGAUCCAa -3'
miRNA:   3'- -AGGACGaagcuGGCCCGugGUUGGGU- -5'
18124 3' -58.5 NC_004680.1 + 39179 0.69 0.39384
Target:  5'- aCCcGCUUCGACUcgcccgaGGcucGCACCAGCCUg -3'
miRNA:   3'- aGGaCGAAGCUGG-------CC---CGUGGUUGGGu -5'
18124 3' -58.5 NC_004680.1 + 8992 0.69 0.389422
Target:  5'- aUCUGCUUCGACCGcaaCACCucguaguuguccauGCCCAa -3'
miRNA:   3'- aGGACGAAGCUGGCcc-GUGGu-------------UGGGU- -5'
18124 3' -58.5 NC_004680.1 + 11072 0.69 0.380684
Target:  5'- aUCCUGCU---GCCGGGCGgccuugguggcggccCCGgcGCCCAa -3'
miRNA:   3'- -AGGACGAagcUGGCCCGU---------------GGU--UGGGU- -5'
18124 3' -58.5 NC_004680.1 + 18200 0.69 0.377226
Target:  5'- aCCUGCaaccgGAUCGGcGCGCCGguACCCAc -3'
miRNA:   3'- aGGACGaag--CUGGCC-CGUGGU--UGGGU- -5'
18124 3' -58.5 NC_004680.1 + 8529 0.72 0.256727
Target:  5'- gCCUGC--CGGgUGGGUGCCAGCCCc -3'
miRNA:   3'- aGGACGaaGCUgGCCCGUGGUUGGGu -5'
18124 3' -58.5 NC_004680.1 + 29713 1.09 0.000538
Target:  5'- uUCCUGCUUCGACCGGGCACCAACCCAa -3'
miRNA:   3'- -AGGACGAAGCUGGCCCGUGGUUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.