miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18124 5' -59.1 NC_004680.1 + 25505 0.66 0.514404
Target:  5'- cGCGuG-GCGGGGCUCaAGGCCUGa- -3'
miRNA:   3'- cCGUcCaCGCCCCGAGgUUUGGACgu -5'
18124 5' -59.1 NC_004680.1 + 6482 0.66 0.504173
Target:  5'- cGUAGGUGCaGGGUUagCGAACCgcuucGCAu -3'
miRNA:   3'- cCGUCCACGcCCCGAg-GUUUGGa----CGU- -5'
18124 5' -59.1 NC_004680.1 + 18611 0.66 0.494031
Target:  5'- cGGUguuGGUGCGGGcaUCgCGGACCUGUu -3'
miRNA:   3'- -CCGu--CCACGCCCcgAG-GUUUGGACGu -5'
18124 5' -59.1 NC_004680.1 + 21786 0.68 0.389603
Target:  5'- -aCAGGgGCGGGGCUaucCCAGA-CUGCu -3'
miRNA:   3'- ccGUCCaCGCCCCGA---GGUUUgGACGu -5'
18124 5' -59.1 NC_004680.1 + 12812 0.7 0.308103
Target:  5'- uGGCuGGUGCGGcucccGCguugCCGAACCUGg- -3'
miRNA:   3'- -CCGuCCACGCCc----CGa---GGUUUGGACgu -5'
18124 5' -59.1 NC_004680.1 + 26915 0.7 0.290588
Target:  5'- uGGCAGGcacgcggucguugGCGGGGCaCCAccACUUGCGg -3'
miRNA:   3'- -CCGUCCa------------CGCCCCGaGGUu-UGGACGU- -5'
18124 5' -59.1 NC_004680.1 + 178 0.71 0.272504
Target:  5'- cGGCGGaucaugaUGUGGuGGCgCCAGACCUGCc -3'
miRNA:   3'- -CCGUCc------ACGCC-CCGaGGUUUGGACGu -5'
18124 5' -59.1 NC_004680.1 + 29676 1.1 0.000346
Target:  5'- gGGCAGGUGCGGGGCUCCAAACCUGCAa -3'
miRNA:   3'- -CCGUCCACGCCCCGAGGUUUGGACGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.