Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18124 | 5' | -59.1 | NC_004680.1 | + | 25505 | 0.66 | 0.514404 |
Target: 5'- cGCGuG-GCGGGGCUCaAGGCCUGa- -3' miRNA: 3'- cCGUcCaCGCCCCGAGgUUUGGACgu -5' |
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18124 | 5' | -59.1 | NC_004680.1 | + | 6482 | 0.66 | 0.504173 |
Target: 5'- cGUAGGUGCaGGGUUagCGAACCgcuucGCAu -3' miRNA: 3'- cCGUCCACGcCCCGAg-GUUUGGa----CGU- -5' |
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18124 | 5' | -59.1 | NC_004680.1 | + | 18611 | 0.66 | 0.494031 |
Target: 5'- cGGUguuGGUGCGGGcaUCgCGGACCUGUu -3' miRNA: 3'- -CCGu--CCACGCCCcgAG-GUUUGGACGu -5' |
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18124 | 5' | -59.1 | NC_004680.1 | + | 21786 | 0.68 | 0.389603 |
Target: 5'- -aCAGGgGCGGGGCUaucCCAGA-CUGCu -3' miRNA: 3'- ccGUCCaCGCCCCGA---GGUUUgGACGu -5' |
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18124 | 5' | -59.1 | NC_004680.1 | + | 12812 | 0.7 | 0.308103 |
Target: 5'- uGGCuGGUGCGGcucccGCguugCCGAACCUGg- -3' miRNA: 3'- -CCGuCCACGCCc----CGa---GGUUUGGACgu -5' |
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18124 | 5' | -59.1 | NC_004680.1 | + | 26915 | 0.7 | 0.290588 |
Target: 5'- uGGCAGGcacgcggucguugGCGGGGCaCCAccACUUGCGg -3' miRNA: 3'- -CCGUCCa------------CGCCCCGaGGUu-UGGACGU- -5' |
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18124 | 5' | -59.1 | NC_004680.1 | + | 178 | 0.71 | 0.272504 |
Target: 5'- cGGCGGaucaugaUGUGGuGGCgCCAGACCUGCc -3' miRNA: 3'- -CCGUCc------ACGCC-CCGaGGUUUGGACGu -5' |
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18124 | 5' | -59.1 | NC_004680.1 | + | 29676 | 1.1 | 0.000346 |
Target: 5'- gGGCAGGUGCGGGGCUCCAAACCUGCAa -3' miRNA: 3'- -CCGUCCACGCCCCGAGGUUUGGACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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