miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18125 3' -53 NC_004680.1 + 43202 0.66 0.861054
Target:  5'- cGUGaGUGCcguUCGUGUG-GUCGGCACu -3'
miRNA:   3'- uCGC-CGCGu--AGCACAUgCAGUUGUGu -5'
18125 3' -53 NC_004680.1 + 43398 0.66 0.861054
Target:  5'- aGGCGGCGauccuugCGcagcGU-CGUCAACGCAc -3'
miRNA:   3'- -UCGCCGCgua----GCa---CAuGCAGUUGUGU- -5'
18125 3' -53 NC_004680.1 + 57240 0.66 0.843953
Target:  5'- cGGCGGCGCcggggaaucCGUGccauuCGUCgAACACGa -3'
miRNA:   3'- -UCGCCGCGua-------GCACau---GCAG-UUGUGU- -5'
18125 3' -53 NC_004680.1 + 2133 0.66 0.835055
Target:  5'- aGGCGuguguugauGCGCGUCGUGauggugcGCGUCcGCGCc -3'
miRNA:   3'- -UCGC---------CGCGUAGCACa------UGCAGuUGUGu -5'
18125 3' -53 NC_004680.1 + 57523 0.66 0.835055
Target:  5'- uGGCGGCGCGgu-UGUAgG-CGGCGCu -3'
miRNA:   3'- -UCGCCGCGUagcACAUgCaGUUGUGu -5'
18125 3' -53 NC_004680.1 + 43437 0.67 0.796396
Target:  5'- cGCGGagggagGCGUCGUgauguguGUAUGUgGGCACAa -3'
miRNA:   3'- uCGCCg-----CGUAGCA-------CAUGCAgUUGUGU- -5'
18125 3' -53 NC_004680.1 + 27365 0.67 0.766193
Target:  5'- uGGUGGUGUgacggugGUCGauUGCGUCGACACc -3'
miRNA:   3'- -UCGCCGCG-------UAGCacAUGCAGUUGUGu -5'
18125 3' -53 NC_004680.1 + 5521 0.68 0.735784
Target:  5'- uGgGGCGUGUCGuUGU-CGUgAACGCGg -3'
miRNA:   3'- uCgCCGCGUAGC-ACAuGCAgUUGUGU- -5'
18125 3' -53 NC_004680.1 + 55594 0.69 0.692425
Target:  5'- cGCGGUGCccgGUUG-GUGCGUCGGCuGCu -3'
miRNA:   3'- uCGCCGCG---UAGCaCAUGCAGUUG-UGu -5'
18125 3' -53 NC_004680.1 + 7339 0.7 0.648109
Target:  5'- cGCGGCGaa-CGUGUGCacCGACACGa -3'
miRNA:   3'- uCGCCGCguaGCACAUGcaGUUGUGU- -5'
18125 3' -53 NC_004680.1 + 7002 0.7 0.592445
Target:  5'- cGCaGGCGCAucUCGUGgaguucGgGUCGGCGCAc -3'
miRNA:   3'- uCG-CCGCGU--AGCACa-----UgCAGUUGUGU- -5'
18125 3' -53 NC_004680.1 + 11319 0.71 0.548468
Target:  5'- cGGCGGCaaCGUCGUGUcauACGgCAACACc -3'
miRNA:   3'- -UCGCCGc-GUAGCACA---UGCaGUUGUGu -5'
18125 3' -53 NC_004680.1 + 45607 0.72 0.505564
Target:  5'- gGGCGGCGCGUC-UG-GCGUC-GCGCc -3'
miRNA:   3'- -UCGCCGCGUAGcACaUGCAGuUGUGu -5'
18125 3' -53 NC_004680.1 + 16991 0.73 0.454091
Target:  5'- uGGCGGCGCAaCGUGUugGggaUCggUAUg -3'
miRNA:   3'- -UCGCCGCGUaGCACAugC---AGuuGUGu -5'
18125 3' -53 NC_004680.1 + 30600 1.09 0.001909
Target:  5'- cAGCGGCGCAUCGUGUACGUCAACACAu -3'
miRNA:   3'- -UCGCCGCGUAGCACAUGCAGUUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.