miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18125 5' -55.8 NC_004680.1 + 40298 0.66 0.740324
Target:  5'- uCCGUGuGGAUCAgCACCagcucCGCCAg -3'
miRNA:   3'- cGGCGC-CCUAGUgGUGGcaaa-GUGGU- -5'
18125 5' -55.8 NC_004680.1 + 40764 0.66 0.718421
Target:  5'- uGCCaaGGGugcagucaucgacAUgACCGCCGUUgcucUCACCGa -3'
miRNA:   3'- -CGGcgCCC-------------UAgUGGUGGCAA----AGUGGU- -5'
18125 5' -55.8 NC_004680.1 + 44 0.66 0.708917
Target:  5'- cCCGaaauGGGGUCugACCugCGguUUUCGCCAc -3'
miRNA:   3'- cGGCg---CCCUAG--UGGugGC--AAAGUGGU- -5'
18125 5' -55.8 NC_004680.1 + 58863 0.66 0.698287
Target:  5'- gGCUGuuGGGUCGUCGCCGUauUUCAuCCAc -3'
miRNA:   3'- -CGGCgcCCUAGUGGUGGCA--AAGU-GGU- -5'
18125 5' -55.8 NC_004680.1 + 12457 0.67 0.687594
Target:  5'- gGCgGCGGcccGAUgGCUGCCGgugCGCCAc -3'
miRNA:   3'- -CGgCGCC---CUAgUGGUGGCaaaGUGGU- -5'
18125 5' -55.8 NC_004680.1 + 35905 0.67 0.67685
Target:  5'- aGCCGCGGcaccuuguccgcGAUCaaucugGCCGCCGgggcgcaUCACCc -3'
miRNA:   3'- -CGGCGCC------------CUAG------UGGUGGCaa-----AGUGGu -5'
18125 5' -55.8 NC_004680.1 + 17040 0.67 0.67685
Target:  5'- cGUCaGCGGucGAguUCACCACCGg--CACCu -3'
miRNA:   3'- -CGG-CGCC--CU--AGUGGUGGCaaaGUGGu -5'
18125 5' -55.8 NC_004680.1 + 43478 0.67 0.67685
Target:  5'- cGCUGCGcaaGGAUCGCCGCCugccggCACgAa -3'
miRNA:   3'- -CGGCGC---CCUAGUGGUGGcaaa--GUGgU- -5'
18125 5' -55.8 NC_004680.1 + 56562 0.67 0.641159
Target:  5'- uGCgGCGGuGAUCGucgguguaguggauUgACUGUUUCACCGu -3'
miRNA:   3'- -CGgCGCC-CUAGU--------------GgUGGCAAAGUGGU- -5'
18125 5' -55.8 NC_004680.1 + 19514 0.67 0.633564
Target:  5'- gGCC-CGGGugacggCGCCGCCGgugguaaCACCAc -3'
miRNA:   3'- -CGGcGCCCua----GUGGUGGCaaa----GUGGU- -5'
18125 5' -55.8 NC_004680.1 + 53096 0.68 0.622715
Target:  5'- gGCUGCGuGGAUCGCCGCgUGggacaGCCu -3'
miRNA:   3'- -CGGCGC-CCUAGUGGUG-GCaaag-UGGu -5'
18125 5' -55.8 NC_004680.1 + 11274 0.68 0.590253
Target:  5'- uGCCGCaGGA-CGCUGCCGUgUUCuCCGc -3'
miRNA:   3'- -CGGCGcCCUaGUGGUGGCA-AAGuGGU- -5'
18125 5' -55.8 NC_004680.1 + 19608 0.68 0.579489
Target:  5'- -aCGUGGuGUUACCACCGgcggCGCCGu -3'
miRNA:   3'- cgGCGCCcUAGUGGUGGCaaa-GUGGU- -5'
18125 5' -55.8 NC_004680.1 + 18875 0.68 0.568767
Target:  5'- cGUgGCgGGGAUCACCGa-GUUUCACg- -3'
miRNA:   3'- -CGgCG-CCCUAGUGGUggCAAAGUGgu -5'
18125 5' -55.8 NC_004680.1 + 18515 0.69 0.558096
Target:  5'- cGCCGCGGauagcGGaCACCACCGUgUCAaUCGu -3'
miRNA:   3'- -CGGCGCC-----CUaGUGGUGGCAaAGU-GGU- -5'
18125 5' -55.8 NC_004680.1 + 35380 0.69 0.547482
Target:  5'- aGCCGCGGG---GCCGCgGUUUCGa-- -3'
miRNA:   3'- -CGGCGCCCuagUGGUGgCAAAGUggu -5'
18125 5' -55.8 NC_004680.1 + 6008 0.69 0.547482
Target:  5'- --gGCGGGuguUCACCACCGgg--GCCAc -3'
miRNA:   3'- cggCGCCCu--AGUGGUGGCaaagUGGU- -5'
18125 5' -55.8 NC_004680.1 + 14677 0.69 0.547482
Target:  5'- uUCGCgGGGAUCGCCG-CGUUcUCACUg -3'
miRNA:   3'- cGGCG-CCCUAGUGGUgGCAA-AGUGGu -5'
18125 5' -55.8 NC_004680.1 + 39855 0.69 0.536933
Target:  5'- cGCCGCaGGGAgCGCCGCagagagCGCCGc -3'
miRNA:   3'- -CGGCG-CCCUaGUGGUGgcaaa-GUGGU- -5'
18125 5' -55.8 NC_004680.1 + 39591 0.69 0.536933
Target:  5'- cGCCGCaGGGAgCGCCGCauggagCGCCGc -3'
miRNA:   3'- -CGGCG-CCCUaGUGGUGgcaaa-GUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.