Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18125 | 5' | -55.8 | NC_004680.1 | + | 44 | 0.66 | 0.708917 |
Target: 5'- cCCGaaauGGGGUCugACCugCGguUUUCGCCAc -3' miRNA: 3'- cGGCg---CCCUAG--UGGugGC--AAAGUGGU- -5' |
|||||||
18125 | 5' | -55.8 | NC_004680.1 | + | 6008 | 0.69 | 0.547482 |
Target: 5'- --gGCGGGuguUCACCACCGgg--GCCAc -3' miRNA: 3'- cggCGCCCu--AGUGGUGGCaaagUGGU- -5' |
|||||||
18125 | 5' | -55.8 | NC_004680.1 | + | 11274 | 0.68 | 0.590253 |
Target: 5'- uGCCGCaGGA-CGCUGCCGUgUUCuCCGc -3' miRNA: 3'- -CGGCGcCCUaGUGGUGGCA-AAGuGGU- -5' |
|||||||
18125 | 5' | -55.8 | NC_004680.1 | + | 12457 | 0.67 | 0.687594 |
Target: 5'- gGCgGCGGcccGAUgGCUGCCGgugCGCCAc -3' miRNA: 3'- -CGgCGCC---CUAgUGGUGGCaaaGUGGU- -5' |
|||||||
18125 | 5' | -55.8 | NC_004680.1 | + | 14677 | 0.69 | 0.547482 |
Target: 5'- uUCGCgGGGAUCGCCG-CGUUcUCACUg -3' miRNA: 3'- cGGCG-CCCUAGUGGUgGCAA-AGUGGu -5' |
|||||||
18125 | 5' | -55.8 | NC_004680.1 | + | 17040 | 0.67 | 0.67685 |
Target: 5'- cGUCaGCGGucGAguUCACCACCGg--CACCu -3' miRNA: 3'- -CGG-CGCC--CU--AGUGGUGGCaaaGUGGu -5' |
|||||||
18125 | 5' | -55.8 | NC_004680.1 | + | 18515 | 0.69 | 0.558096 |
Target: 5'- cGCCGCGGauagcGGaCACCACCGUgUCAaUCGu -3' miRNA: 3'- -CGGCGCC-----CUaGUGGUGGCAaAGU-GGU- -5' |
|||||||
18125 | 5' | -55.8 | NC_004680.1 | + | 18875 | 0.68 | 0.568767 |
Target: 5'- cGUgGCgGGGAUCACCGa-GUUUCACg- -3' miRNA: 3'- -CGgCG-CCCUAGUGGUggCAAAGUGgu -5' |
|||||||
18125 | 5' | -55.8 | NC_004680.1 | + | 19514 | 0.67 | 0.633564 |
Target: 5'- gGCC-CGGGugacggCGCCGCCGgugguaaCACCAc -3' miRNA: 3'- -CGGcGCCCua----GUGGUGGCaaa----GUGGU- -5' |
|||||||
18125 | 5' | -55.8 | NC_004680.1 | + | 19608 | 0.68 | 0.579489 |
Target: 5'- -aCGUGGuGUUACCACCGgcggCGCCGu -3' miRNA: 3'- cgGCGCCcUAGUGGUGGCaaa-GUGGU- -5' |
|||||||
18125 | 5' | -55.8 | NC_004680.1 | + | 20869 | 0.69 | 0.526455 |
Target: 5'- cGuuGCGGGAcaaCGCCAUgGgccugUCACCGg -3' miRNA: 3'- -CggCGCCCUa--GUGGUGgCaa---AGUGGU- -5' |
|||||||
18125 | 5' | -55.8 | NC_004680.1 | + | 25938 | 0.72 | 0.381382 |
Target: 5'- uCCG-GGGAUCACCAgggcuCCGUggucUCGCCGu -3' miRNA: 3'- cGGCgCCCUAGUGGU-----GGCAa---AGUGGU- -5' |
|||||||
18125 | 5' | -55.8 | NC_004680.1 | + | 26106 | 0.75 | 0.246056 |
Target: 5'- cGCCgGCuGGAaCGCCACCGUccucUUCACCGc -3' miRNA: 3'- -CGG-CGcCCUaGUGGUGGCA----AAGUGGU- -5' |
|||||||
18125 | 5' | -55.8 | NC_004680.1 | + | 26163 | 0.69 | 0.526455 |
Target: 5'- gGCCGCGGGAcugCACaugaaucuugguCAUCGgaUCGCCc -3' miRNA: 3'- -CGGCGCCCUa--GUG------------GUGGCaaAGUGGu -5' |
|||||||
18125 | 5' | -55.8 | NC_004680.1 | + | 26470 | 0.7 | 0.4556 |
Target: 5'- cGCCGaCaGGAUCGCUgACCGcaUCGCCGa -3' miRNA: 3'- -CGGC-GcCCUAGUGG-UGGCaaAGUGGU- -5' |
|||||||
18125 | 5' | -55.8 | NC_004680.1 | + | 27594 | 0.71 | 0.417487 |
Target: 5'- gGCCGCcccggcaucucGGAUCACCGCUGggUgACCGa -3' miRNA: 3'- -CGGCGc----------CCUAGUGGUGGCaaAgUGGU- -5' |
|||||||
18125 | 5' | -55.8 | NC_004680.1 | + | 29206 | 0.69 | 0.516055 |
Target: 5'- aGCCGUuccGGGGUUGCCGCggCGUUccgCGCCGa -3' miRNA: 3'- -CGGCG---CCCUAGUGGUG--GCAAa--GUGGU- -5' |
|||||||
18125 | 5' | -55.8 | NC_004680.1 | + | 30561 | 1.1 | 0.000846 |
Target: 5'- cGCCGCGGGAUCACCACCGUUUCACCAc -3' miRNA: 3'- -CGGCGCCCUAGUGGUGGCAAAGUGGU- -5' |
|||||||
18125 | 5' | -55.8 | NC_004680.1 | + | 33032 | 0.7 | 0.482359 |
Target: 5'- uCCGCGGGuucugcguuucuugGUUGCCAUCGUUUC-CCu -3' miRNA: 3'- cGGCGCCC--------------UAGUGGUGGCAAAGuGGu -5' |
|||||||
18125 | 5' | -55.8 | NC_004680.1 | + | 33534 | 0.71 | 0.444929 |
Target: 5'- uGCgGUGcGGAUCGCCGCCgGUUUCcugacgggcgcccGCCGu -3' miRNA: 3'- -CGgCGC-CCUAGUGGUGG-CAAAG-------------UGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home