miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18125 5' -55.8 NC_004680.1 + 35905 0.67 0.67685
Target:  5'- aGCCGCGGcaccuuguccgcGAUCaaucugGCCGCCGgggcgcaUCACCc -3'
miRNA:   3'- -CGGCGCC------------CUAG------UGGUGGCaa-----AGUGGu -5'
18125 5' -55.8 NC_004680.1 + 39591 0.69 0.536933
Target:  5'- cGCCGCaGGGAgCGCCGCauggagCGCCGc -3'
miRNA:   3'- -CGGCG-CCCUaGUGGUGgcaaa-GUGGU- -5'
18125 5' -55.8 NC_004680.1 + 39855 0.69 0.536933
Target:  5'- cGCCGCaGGGAgCGCCGCagagagCGCCGc -3'
miRNA:   3'- -CGGCG-CCCUaGUGGUGgcaaa-GUGGU- -5'
18125 5' -55.8 NC_004680.1 + 6008 0.69 0.547482
Target:  5'- --gGCGGGuguUCACCACCGgg--GCCAc -3'
miRNA:   3'- cggCGCCCu--AGUGGUGGCaaagUGGU- -5'
18125 5' -55.8 NC_004680.1 + 35380 0.69 0.547482
Target:  5'- aGCCGCGGG---GCCGCgGUUUCGa-- -3'
miRNA:   3'- -CGGCGCCCuagUGGUGgCAAAGUggu -5'
18125 5' -55.8 NC_004680.1 + 18875 0.68 0.568767
Target:  5'- cGUgGCgGGGAUCACCGa-GUUUCACg- -3'
miRNA:   3'- -CGgCG-CCCUAGUGGUggCAAAGUGgu -5'
18125 5' -55.8 NC_004680.1 + 11274 0.68 0.590253
Target:  5'- uGCCGCaGGA-CGCUGCCGUgUUCuCCGc -3'
miRNA:   3'- -CGGCGcCCUaGUGGUGGCA-AAGuGGU- -5'
18125 5' -55.8 NC_004680.1 + 53096 0.68 0.622715
Target:  5'- gGCUGCGuGGAUCGCCGCgUGggacaGCCu -3'
miRNA:   3'- -CGGCGC-CCUAGUGGUG-GCaaag-UGGu -5'
18125 5' -55.8 NC_004680.1 + 19514 0.67 0.633564
Target:  5'- gGCC-CGGGugacggCGCCGCCGgugguaaCACCAc -3'
miRNA:   3'- -CGGcGCCCua----GUGGUGGCaaa----GUGGU- -5'
18125 5' -55.8 NC_004680.1 + 39807 0.69 0.526455
Target:  5'- cGCCGCaGGGAgCGCCGCagGgagCGCCGc -3'
miRNA:   3'- -CGGCG-CCCUaGUGGUGg-CaaaGUGGU- -5'
18125 5' -55.8 NC_004680.1 + 20869 0.69 0.526455
Target:  5'- cGuuGCGGGAcaaCGCCAUgGgccugUCACCGg -3'
miRNA:   3'- -CggCGCCCUa--GUGGUGgCaa---AGUGGU- -5'
18125 5' -55.8 NC_004680.1 + 39771 0.7 0.475347
Target:  5'- cGCCGCaGGGAgCGCCGCaUGgagCGCCGc -3'
miRNA:   3'- -CGGCG-CCCUaGUGGUG-GCaaaGUGGU- -5'
18125 5' -55.8 NC_004680.1 + 39627 0.74 0.286172
Target:  5'- cGCCGCaGGGAgCGCCGCaCGgagCGCCGc -3'
miRNA:   3'- -CGGCG-CCCUaGUGGUG-GCaaaGUGGU- -5'
18125 5' -55.8 NC_004680.1 + 46025 0.73 0.323403
Target:  5'- gGCCGCcccGUCACCGCCGaaUUCACCAc -3'
miRNA:   3'- -CGGCGcccUAGUGGUGGCa-AAGUGGU- -5'
18125 5' -55.8 NC_004680.1 + 41315 0.72 0.372687
Target:  5'- uGCCGCugcuGAUCGCCGCCGgcaUCAUCGg -3'
miRNA:   3'- -CGGCGcc--CUAGUGGUGGCaa-AGUGGU- -5'
18125 5' -55.8 NC_004680.1 + 27594 0.71 0.417487
Target:  5'- gGCCGCcccggcaucucGGAUCACCGCUGggUgACCGa -3'
miRNA:   3'- -CGGCGc----------CCUAGUGGUGGCaaAgUGGU- -5'
18125 5' -55.8 NC_004680.1 + 33534 0.71 0.444929
Target:  5'- uGCgGUGcGGAUCGCCGCCgGUUUCcugacgggcgcccGCCGu -3'
miRNA:   3'- -CGgCGC-CCUAGUGGUGG-CAAAG-------------UGGU- -5'
18125 5' -55.8 NC_004680.1 + 26470 0.7 0.4556
Target:  5'- cGCCGaCaGGAUCGCUgACCGcaUCGCCGa -3'
miRNA:   3'- -CGGC-GcCCUAGUGG-UGGCaaAGUGGU- -5'
18125 5' -55.8 NC_004680.1 + 39663 0.7 0.475347
Target:  5'- cGCCGCaGGGAgCGCCGCaUGgagCGCCGc -3'
miRNA:   3'- -CGGCG-CCCUaGUGGUG-GCaaaGUGGU- -5'
18125 5' -55.8 NC_004680.1 + 39735 0.7 0.475347
Target:  5'- cGCCGCaGGGAgCGCCGCaUGgagCGCCGc -3'
miRNA:   3'- -CGGCG-CCCUaGUGGUG-GCaaaGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.