miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18126 3' -58 NC_004680.1 + 25923 0.66 0.605189
Target:  5'- gGCUcCGUgGU-CUCGCCGUgGU-GGCg -3'
miRNA:   3'- gCGA-GCGaCAcGAGCGGCAgCAuCCG- -5'
18126 3' -58 NC_004680.1 + 12295 0.66 0.594523
Target:  5'- cCGCUCGCgGggaacGCU-GCCG-CGgacgGGGCg -3'
miRNA:   3'- -GCGAGCGaCa----CGAgCGGCaGCa---UCCG- -5'
18126 3' -58 NC_004680.1 + 31708 0.66 0.583887
Target:  5'- gGUUgGagagGUGUUCGCCGaCGgcGGCa -3'
miRNA:   3'- gCGAgCga--CACGAGCGGCaGCauCCG- -5'
18126 3' -58 NC_004680.1 + 42758 0.67 0.562736
Target:  5'- uCGC-CGCggcauccGUGUaggaggCGCCGUCGUcgagcAGGCg -3'
miRNA:   3'- -GCGaGCGa------CACGa-----GCGGCAGCA-----UCCG- -5'
18126 3' -58 NC_004680.1 + 36341 0.67 0.541797
Target:  5'- uCGCUCGCg--GCa-GCCGUCuu-GGCg -3'
miRNA:   3'- -GCGAGCGacaCGagCGGCAGcauCCG- -5'
18126 3' -58 NC_004680.1 + 54292 0.67 0.531424
Target:  5'- uCGgUCGa-GUGU--GCCGUCGUGGGUg -3'
miRNA:   3'- -GCgAGCgaCACGagCGGCAGCAUCCG- -5'
18126 3' -58 NC_004680.1 + 53087 0.67 0.510902
Target:  5'- uGCUCGUgugGcUGCguggaUCGCCG-CGUGGGa -3'
miRNA:   3'- gCGAGCGa--C-ACG-----AGCGGCaGCAUCCg -5'
18126 3' -58 NC_004680.1 + 57850 0.68 0.500765
Target:  5'- aCGCUaGCUccaugGCgUCGUCGUCGUaccAGGCa -3'
miRNA:   3'- -GCGAgCGAca---CG-AGCGGCAGCA---UCCG- -5'
18126 3' -58 NC_004680.1 + 27300 0.68 0.490717
Target:  5'- gGCUUGCcGcUGCgggCGCUGUUGUuGGCc -3'
miRNA:   3'- gCGAGCGaC-ACGa--GCGGCAGCAuCCG- -5'
18126 3' -58 NC_004680.1 + 36193 0.68 0.460191
Target:  5'- uGCUCGCUG-GCUCauggaacagauggGCuacuCGUCGU-GGCa -3'
miRNA:   3'- gCGAGCGACaCGAG-------------CG----GCAGCAuCCG- -5'
18126 3' -58 NC_004680.1 + 33878 0.7 0.387314
Target:  5'- uGC-CGUUGuUGC-CGCCGUUGUAuguGGCg -3'
miRNA:   3'- gCGaGCGAC-ACGaGCGGCAGCAU---CCG- -5'
18126 3' -58 NC_004680.1 + 34774 1.12 0.000392
Target:  5'- gCGCUCGCUGUGCUCGCCGUCGUAGGCa -3'
miRNA:   3'- -GCGAGCGACACGAGCGGCAGCAUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.