miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18126 5' -49.3 NC_004680.1 + 9986 0.66 0.977735
Target:  5'- gGCugacCGCAGCAACGccgaugaugccugucGCGGCGGCcguGAAa -3'
miRNA:   3'- -CGu---GCGUUGUUGC---------------UGCUGCUGu--CUUc -5'
18126 5' -49.3 NC_004680.1 + 12574 0.66 0.976676
Target:  5'- ---gGCAugGACGGCGGCGGugcgcuCGGAAu -3'
miRNA:   3'- cgugCGUugUUGCUGCUGCU------GUCUUc -5'
18126 5' -49.3 NC_004680.1 + 6299 0.66 0.976676
Target:  5'- cGCAgGCggUAuCGcUGACGGCAGGGc -3'
miRNA:   3'- -CGUgCGuuGUuGCuGCUGCUGUCUUc -5'
18126 5' -49.3 NC_004680.1 + 25823 0.66 0.976676
Target:  5'- gGCACuGCGGCGGCGgccgccaccACGGCGAgaccaCGGAGc -3'
miRNA:   3'- -CGUG-CGUUGUUGC---------UGCUGCU-----GUCUUc -5'
18126 5' -49.3 NC_004680.1 + 49353 0.66 0.973867
Target:  5'- -gACGCGcCAGgGAgGACuGGCGGGAGu -3'
miRNA:   3'- cgUGCGUuGUUgCUgCUG-CUGUCUUC- -5'
18126 5' -49.3 NC_004680.1 + 44219 0.66 0.973867
Target:  5'- cGCA-GCAGCAGCGAgaaGAgCGGCAGc-- -3'
miRNA:   3'- -CGUgCGUUGUUGCUg--CU-GCUGUCuuc -5'
18126 5' -49.3 NC_004680.1 + 7704 0.66 0.97082
Target:  5'- --cCGCGACAAcCGugGugccGCGACGGAc- -3'
miRNA:   3'- cguGCGUUGUU-GCugC----UGCUGUCUuc -5'
18126 5' -49.3 NC_004680.1 + 9860 0.66 0.97082
Target:  5'- gGCcCGCcacaGGCAACGACGAC-ACAaGAGa -3'
miRNA:   3'- -CGuGCG----UUGUUGCUGCUGcUGUcUUC- -5'
18126 5' -49.3 NC_004680.1 + 26797 0.66 0.967526
Target:  5'- gGCAC-CGGCAuCGGCGAUGACcGcAAGu -3'
miRNA:   3'- -CGUGcGUUGUuGCUGCUGCUGuC-UUC- -5'
18126 5' -49.3 NC_004680.1 + 59275 0.66 0.963977
Target:  5'- gGCGCGgGACuugggcGCGugGcACGccuuGCAGAGGg -3'
miRNA:   3'- -CGUGCgUUGu-----UGCugC-UGC----UGUCUUC- -5'
18126 5' -49.3 NC_004680.1 + 5790 0.67 0.960165
Target:  5'- aUACGCAGCAGcCGACGgauggaacGCGAC-GAAc -3'
miRNA:   3'- cGUGCGUUGUU-GCUGC--------UGCUGuCUUc -5'
18126 5' -49.3 NC_004680.1 + 2609 0.67 0.960165
Target:  5'- -gACGguACGGCGACGAUcACAGcuGa -3'
miRNA:   3'- cgUGCguUGUUGCUGCUGcUGUCuuC- -5'
18126 5' -49.3 NC_004680.1 + 10566 0.67 0.956084
Target:  5'- -aACGCGugGaucguugcccACGGCGACGGCAucaaaGAGGc -3'
miRNA:   3'- cgUGCGUugU----------UGCUGCUGCUGU-----CUUC- -5'
18126 5' -49.3 NC_004680.1 + 38434 0.67 0.951728
Target:  5'- uCACG-GGCAGCGGCGAgaggGACAGAGc -3'
miRNA:   3'- cGUGCgUUGUUGCUGCUg---CUGUCUUc -5'
18126 5' -49.3 NC_004680.1 + 53475 0.67 0.947091
Target:  5'- aCAUGCAACuguuCGACGcaguCGGCGGGGa -3'
miRNA:   3'- cGUGCGUUGuu--GCUGCu---GCUGUCUUc -5'
18126 5' -49.3 NC_004680.1 + 23167 0.67 0.947091
Target:  5'- gGCAC-CAACAcCGGCGACGAgGuuGAAa -3'
miRNA:   3'- -CGUGcGUUGUuGCUGCUGCUgU--CUUc -5'
18126 5' -49.3 NC_004680.1 + 11146 0.67 0.942169
Target:  5'- cGCcCgGCAGCAggAUGccauCGACGGCGGGAGa -3'
miRNA:   3'- -CGuG-CGUUGU--UGCu---GCUGCUGUCUUC- -5'
18126 5' -49.3 NC_004680.1 + 48219 0.68 0.93696
Target:  5'- gGUugGCu-CGcCGGCG-CGACGGAAGc -3'
miRNA:   3'- -CGugCGuuGUuGCUGCuGCUGUCUUC- -5'
18126 5' -49.3 NC_004680.1 + 19655 0.68 0.93146
Target:  5'- gGCACGUucacauuCAaugaucaggacuACGugGGCGGCGGAGa -3'
miRNA:   3'- -CGUGCGuu-----GU------------UGCugCUGCUGUCUUc -5'
18126 5' -49.3 NC_004680.1 + 40646 0.68 0.93146
Target:  5'- cGCGCGCAgagccccacGCcACGACGuGCG-CAGAGc -3'
miRNA:   3'- -CGUGCGU---------UGuUGCUGC-UGCuGUCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.