miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18127 3' -58.4 NC_004680.1 + 17197 0.66 0.583071
Target:  5'- gGCAAcGuGAUcGGACgGUGCCCcgguguGGCGCAa -3'
miRNA:   3'- gCGUU-C-CUGaUCUG-CACGGG------CCGCGU- -5'
18127 3' -58.4 NC_004680.1 + 28966 0.66 0.576682
Target:  5'- gGC--GGGCUGGACGUuguaguccacgugcgGgCCGGUGCGu -3'
miRNA:   3'- gCGuuCCUGAUCUGCA---------------CgGGCCGCGU- -5'
18127 3' -58.4 NC_004680.1 + 16239 0.66 0.5513
Target:  5'- uCGC-AGGGCaAGACGacgGCgaCGGUGCAg -3'
miRNA:   3'- -GCGuUCCUGaUCUGCa--CGg-GCCGCGU- -5'
18127 3' -58.4 NC_004680.1 + 22305 0.66 0.540823
Target:  5'- cCGC-AGG-UUGGAa-UGUCCGGCGCGg -3'
miRNA:   3'- -GCGuUCCuGAUCUgcACGGGCCGCGU- -5'
18127 3' -58.4 NC_004680.1 + 27843 0.66 0.540823
Target:  5'- gGCGGccGGACgguggUGGACGcGCUgGGCGCGa -3'
miRNA:   3'- gCGUU--CCUG-----AUCUGCaCGGgCCGCGU- -5'
18127 3' -58.4 NC_004680.1 + 33974 0.66 0.530413
Target:  5'- cCGUucGGACUAcGACGUgugGCgUGGCGUg -3'
miRNA:   3'- -GCGuuCCUGAU-CUGCA---CGgGCCGCGu -5'
18127 3' -58.4 NC_004680.1 + 48012 0.66 0.530413
Target:  5'- uGCGGGGACggauGugGUGUUgCGGCGg- -3'
miRNA:   3'- gCGUUCCUGau--CugCACGG-GCCGCgu -5'
18127 3' -58.4 NC_004680.1 + 1538 0.67 0.509821
Target:  5'- gCGUAAgucGGGCUcgcAGGCGUucgauaugacacGCCUGGUGCAg -3'
miRNA:   3'- -GCGUU---CCUGA---UCUGCA------------CGGGCCGCGU- -5'
18127 3' -58.4 NC_004680.1 + 19751 0.67 0.488568
Target:  5'- gGUAAGGGCgcguuGGCGUcguuccaGUCCGGCgGCAa -3'
miRNA:   3'- gCGUUCCUGau---CUGCA-------CGGGCCG-CGU- -5'
18127 3' -58.4 NC_004680.1 + 35014 0.67 0.486566
Target:  5'- gCGCcGGGcacguCUAguccuugcggcguuGACGUGCCCGGaCGCu -3'
miRNA:   3'- -GCGuUCCu----GAU--------------CUGCACGGGCC-GCGu -5'
18127 3' -58.4 NC_004680.1 + 45612 0.68 0.459928
Target:  5'- uGCGAGGGC--GGCGcGUCUGGCGUc -3'
miRNA:   3'- gCGUUCCUGauCUGCaCGGGCCGCGu -5'
18127 3' -58.4 NC_004680.1 + 30442 0.68 0.458956
Target:  5'- gGCGAGGACaagcugaUGG-UGUGCaaCCGGUGCGg -3'
miRNA:   3'- gCGUUCCUG-------AUCuGCACG--GGCCGCGU- -5'
18127 3' -58.4 NC_004680.1 + 43633 0.68 0.431264
Target:  5'- cCGCGAGGGac-GACGcGaaagCCGGCGCAg -3'
miRNA:   3'- -GCGUUCCUgauCUGCaCg---GGCCGCGU- -5'
18127 3' -58.4 NC_004680.1 + 12619 0.69 0.412746
Target:  5'- gGCAuGGcGCUGGACGcgaUGgcaCCCGGCGCu -3'
miRNA:   3'- gCGUuCC-UGAUCUGC---AC---GGGCCGCGu -5'
18127 3' -58.4 NC_004680.1 + 49089 0.69 0.412746
Target:  5'- cCGCAAGGAUguuGCGUGCCuCGucguagucaaGCGCGg -3'
miRNA:   3'- -GCGUUCCUGaucUGCACGG-GC----------CGCGU- -5'
18127 3' -58.4 NC_004680.1 + 29323 0.69 0.403673
Target:  5'- aCGUAAGGGCcgGGaACGUGCCCGacagaucgaCGCGa -3'
miRNA:   3'- -GCGUUCCUGa-UC-UGCACGGGCc--------GCGU- -5'
18127 3' -58.4 NC_004680.1 + 35098 1.09 0.00057
Target:  5'- cCGCAAGGACUAGACGUGCCCGGCGCAa -3'
miRNA:   3'- -GCGUUCCUGAUCUGCACGGGCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.