miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18127 5' -52.7 NC_004680.1 + 8792 0.68 0.785786
Target:  5'- -cUGccGGCGGAgACcCGUCCcggCGCg -3'
miRNA:   3'- caACaaCCGCCUgUGaGCAGGua-GCG- -5'
18127 5' -52.7 NC_004680.1 + 52945 0.68 0.785786
Target:  5'- -----cGGCGG-CAuuCUCGUCCGcCGCg -3'
miRNA:   3'- caacaaCCGCCuGU--GAGCAGGUaGCG- -5'
18127 5' -52.7 NC_004680.1 + 8855 0.68 0.785786
Target:  5'- -----cGGCaGGACcauCUCGUugCCGUCGCg -3'
miRNA:   3'- caacaaCCG-CCUGu--GAGCA--GGUAGCG- -5'
18127 5' -52.7 NC_004680.1 + 35152 0.68 0.755206
Target:  5'- aGUUGg-GGCGGAgAUUCGugaUCgCGUCGCc -3'
miRNA:   3'- -CAACaaCCGCCUgUGAGC---AG-GUAGCG- -5'
18127 5' -52.7 NC_004680.1 + 43063 0.68 0.755206
Target:  5'- cGUUGUUGuccaGCGcccacugaaGGCAUUCGUCCcggacGUCGCa -3'
miRNA:   3'- -CAACAAC----CGC---------CUGUGAGCAGG-----UAGCG- -5'
18127 5' -52.7 NC_004680.1 + 26900 0.7 0.623412
Target:  5'- --cGUUGGCGGGgcaccacCACUUGcggUCAUCGCc -3'
miRNA:   3'- caaCAACCGCCU-------GUGAGCa--GGUAGCG- -5'
18127 5' -52.7 NC_004680.1 + 32368 0.71 0.613421
Target:  5'- -aUGUUGaaagcCGGACACUgGUCCG-CGCc -3'
miRNA:   3'- caACAACc----GCCUGUGAgCAGGUaGCG- -5'
18127 5' -52.7 NC_004680.1 + 55937 0.71 0.579154
Target:  5'- gGUUGUcgcGGCGGGCGuCUCGucaaaggugagugUCCAUCGg -3'
miRNA:   3'- -CAACAa--CCGCCUGU-GAGC-------------AGGUAGCg -5'
18127 5' -52.7 NC_004680.1 + 27098 0.71 0.569274
Target:  5'- gGUUGUUGGCGGcGCGCcuguagUCGUCggagaGUCGUu -3'
miRNA:   3'- -CAACAACCGCC-UGUG------AGCAGg----UAGCG- -5'
18127 5' -52.7 NC_004680.1 + 46750 0.74 0.453506
Target:  5'- -gUGUUGGCGcaGACaaACUCGucUCCAUCGUu -3'
miRNA:   3'- caACAACCGC--CUG--UGAGC--AGGUAGCG- -5'
18127 5' -52.7 NC_004680.1 + 35064 1.13 0.001201
Target:  5'- uGUUGUUGGCGGACACUCGUCCAUCGCg -3'
miRNA:   3'- -CAACAACCGCCUGUGAGCAGGUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.