Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18128 | 5' | -52.1 | NC_004680.1 | + | 48078 | 0.66 | 0.88844 |
Target: 5'- aGCGGCUacgGGCGCUUUGGcgcGUGggCGGa -3' miRNA: 3'- -CGCCGAg--UUGCGAAGCU---UACgaGCUa -5' |
|||||||
18128 | 5' | -52.1 | NC_004680.1 | + | 13102 | 0.66 | 0.872895 |
Target: 5'- uGUGGCUCGACGCUcacgaCGAG---UCGAUc -3' miRNA: 3'- -CGCCGAGUUGCGAa----GCUUacgAGCUA- -5' |
|||||||
18128 | 5' | -52.1 | NC_004680.1 | + | 45834 | 0.66 | 0.864727 |
Target: 5'- -aGGCgau-CGCUUCGAGUuGUUCGGg -3' miRNA: 3'- cgCCGaguuGCGAAGCUUA-CGAGCUa -5' |
|||||||
18128 | 5' | -52.1 | NC_004680.1 | + | 3610 | 0.66 | 0.856304 |
Target: 5'- uGCGGCUgCGAcCGCUgaacUGAGgcgcagacUGCUCGAa -3' miRNA: 3'- -CGCCGA-GUU-GCGAa---GCUU--------ACGAGCUa -5' |
|||||||
18128 | 5' | -52.1 | NC_004680.1 | + | 44015 | 0.69 | 0.72809 |
Target: 5'- uGCGGUUCAuuGCgGCUUgGGAUGCccUCGGc -3' miRNA: 3'- -CGCCGAGU--UG-CGAAgCUUACG--AGCUa -5' |
|||||||
18128 | 5' | -52.1 | NC_004680.1 | + | 35445 | 1.09 | 0.002079 |
Target: 5'- cGCGGCUCAACGCUUCGAAUGCUCGAUg -3' miRNA: 3'- -CGCCGAGUUGCGAAGCUUACGAGCUA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home