Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18129 | 5' | -52.6 | NC_004680.1 | + | 2830 | 0.66 | 0.873943 |
Target: 5'- gCGAACUUCUGCCACc-CGuca--CCCg -3' miRNA: 3'- -GCUUGAAGACGGUGcuGCucaucGGG- -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 4380 | 0.78 | 0.274325 |
Target: 5'- aGAACUUCUgGUCACGccauGCGAGgaccGGCCCa -3' miRNA: 3'- gCUUGAAGA-CGGUGC----UGCUCa---UCGGG- -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 11194 | 0.66 | 0.857736 |
Target: 5'- aCGAACggccgcggcgUUCUGCUugGGCGccggGGCCg -3' miRNA: 3'- -GCUUG----------AAGACGGugCUGCuca-UCGGg -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 12285 | 0.68 | 0.803674 |
Target: 5'- gGAACg-CUGCCGCGgACGGGgcGGCUa -3' miRNA: 3'- gCUUGaaGACGGUGC-UGCUCa-UCGGg -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 12325 | 0.68 | 0.793969 |
Target: 5'- gCGAccgccGCUUCgggUGCCGCGcCGGGgAGUCCc -3' miRNA: 3'- -GCU-----UGAAG---ACGGUGCuGCUCaUCGGG- -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 13296 | 0.7 | 0.689405 |
Target: 5'- uCGAugUguuuCCACGGCGGGaugAGCCCu -3' miRNA: 3'- -GCUugAagacGGUGCUGCUCa--UCGGG- -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 20566 | 0.67 | 0.849271 |
Target: 5'- aGGACUUcCUGUCaACGAUGAaggGGCCg -3' miRNA: 3'- gCUUGAA-GACGG-UGCUGCUca-UCGGg -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 21842 | 0.67 | 0.82253 |
Target: 5'- ----aUUCgGCCGCGACGAgGUGGCaCUc -3' miRNA: 3'- gcuugAAGaCGGUGCUGCU-CAUCG-GG- -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 22035 | 0.67 | 0.813198 |
Target: 5'- aCGcGACUguggGCCACGGCGGccauGCCCa -3' miRNA: 3'- -GC-UUGAaga-CGGUGCUGCUcau-CGGG- -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 23320 | 0.73 | 0.503957 |
Target: 5'- aCGAACg--UGCC-CGACGAGcUGGCCg -3' miRNA: 3'- -GCUUGaagACGGuGCUGCUC-AUCGGg -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 24361 | 0.67 | 0.831659 |
Target: 5'- gGAACgggUCgaGUUACGACaagcuGUGGCCCa -3' miRNA: 3'- gCUUGa--AGa-CGGUGCUGcu---CAUCGGG- -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 28255 | 0.68 | 0.763872 |
Target: 5'- aCGAcCg---GCCGCGGaaGGUAGCCCa -3' miRNA: 3'- -GCUuGaagaCGGUGCUgcUCAUCGGG- -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 33645 | 0.67 | 0.813198 |
Target: 5'- aGGAgUUCc-CCACGGCGGGc-GCCCg -3' miRNA: 3'- gCUUgAAGacGGUGCUGCUCauCGGG- -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 36264 | 0.66 | 0.88167 |
Target: 5'- -aGACggCUGCCGCGAgCGAGggauucaacGUCCg -3' miRNA: 3'- gcUUGaaGACGGUGCU-GCUCau-------CGGG- -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 36302 | 1.13 | 0.001189 |
Target: 5'- uCGAACUUCUGCCACGACGAGUAGCCCa -3' miRNA: 3'- -GCUUGAAGACGGUGCUGCUCAUCGGG- -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 38955 | 0.66 | 0.88167 |
Target: 5'- gCGGGCgaaCUGCUugGugGAGUcgauGGCg- -3' miRNA: 3'- -GCUUGaa-GACGGugCugCUCA----UCGgg -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 40502 | 0.68 | 0.784092 |
Target: 5'- gGGGCU-CUGCgCACGuCGAGgcguggGGCUCu -3' miRNA: 3'- gCUUGAaGACG-GUGCuGCUCa-----UCGGG- -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 40567 | 0.69 | 0.700302 |
Target: 5'- aGAGCcccacGCCACGACGuGcgcagAGCCCg -3' miRNA: 3'- gCUUGaaga-CGGUGCUGCuCa----UCGGG- -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 40615 | 0.68 | 0.763872 |
Target: 5'- aGAGCcccacGCCACGACGcGUgcagAGCCCc -3' miRNA: 3'- gCUUGaaga-CGGUGCUGCuCA----UCGGG- -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 40670 | 0.68 | 0.784092 |
Target: 5'- gGGGCU-CUGCgCACGuCGAGgcgcggGGCUCu -3' miRNA: 3'- gCUUGAaGACG-GUGCuGCUCa-----UCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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