Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18129 | 5' | -52.6 | NC_004680.1 | + | 40567 | 0.69 | 0.700302 |
Target: 5'- aGAGCcccacGCCACGACGuGcgcagAGCCCg -3' miRNA: 3'- gCUUGaaga-CGGUGCUGCuCa----UCGGG- -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 56643 | 0.69 | 0.699215 |
Target: 5'- aCGAcacccucuACUUCUaCUGCGACGuccccgccacaucAGUGGCCCg -3' miRNA: 3'- -GCU--------UGAAGAcGGUGCUGC-------------UCAUCGGG- -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 47631 | 0.69 | 0.699215 |
Target: 5'- aGAGCaUUUGCCGCGAUcugauaaGAGUcGCUCa -3' miRNA: 3'- gCUUGaAGACGGUGCUG-------CUCAuCGGG- -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 13296 | 0.7 | 0.689405 |
Target: 5'- uCGAugUguuuCCACGGCGGGaugAGCCCu -3' miRNA: 3'- -GCUugAagacGGUGCUGCUCa--UCGGG- -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 42597 | 0.7 | 0.667455 |
Target: 5'- -cGGCaUCaGCCGCGGCGA--AGCCCa -3' miRNA: 3'- gcUUGaAGaCGGUGCUGCUcaUCGGG- -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 41721 | 0.7 | 0.64537 |
Target: 5'- uGGACUUCUGCCaguuggaugaACGGUGAGUucGCCa -3' miRNA: 3'- gCUUGAAGACGG----------UGCUGCUCAu-CGGg -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 23320 | 0.73 | 0.503957 |
Target: 5'- aCGAACg--UGCC-CGACGAGcUGGCCg -3' miRNA: 3'- -GCUUGaagACGGuGCUGCUC-AUCGGg -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 4380 | 0.78 | 0.274325 |
Target: 5'- aGAACUUCUgGUCACGccauGCGAGgaccGGCCCa -3' miRNA: 3'- gCUUGAAGA-CGGUGC----UGCUCa---UCGGG- -5' |
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18129 | 5' | -52.6 | NC_004680.1 | + | 36302 | 1.13 | 0.001189 |
Target: 5'- uCGAACUUCUGCCACGACGAGUAGCCCa -3' miRNA: 3'- -GCUUGAAGACGGUGCUGCUCAUCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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