miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1813 3' -65.2 NC_001347.2 + 62025 0.66 0.683204
Target:  5'- cCGGCGGACCaGCGGCUgcUGGCccc-CGGa -3'
miRNA:   3'- -GCCGCCUGG-CGCUGG--GCCGccacGCC- -5'
1813 3' -65.2 NC_001347.2 + 227984 0.66 0.683204
Target:  5'- uGGaCGGGCaCGUGuACCCGcUGGcgGCGGa -3'
miRNA:   3'- gCC-GCCUG-GCGC-UGGGCcGCCa-CGCC- -5'
1813 3' -65.2 NC_001347.2 + 120816 0.66 0.674092
Target:  5'- cCGGCGG-CgGCG-CCaUGGCGG-GCGc -3'
miRNA:   3'- -GCCGCCuGgCGCuGG-GCCGCCaCGCc -5'
1813 3' -65.2 NC_001347.2 + 72290 0.66 0.673179
Target:  5'- aGGCucGACgGCGGCagcugCGGCGGUaggacacGCGGg -3'
miRNA:   3'- gCCGc-CUGgCGCUGg----GCCGCCA-------CGCC- -5'
1813 3' -65.2 NC_001347.2 + 69579 0.66 0.66861
Target:  5'- uCGGCGGccgucagcuccuGCUGCGugucgaugcgcugguGCCaGGCGGUGCu- -3'
miRNA:   3'- -GCCGCC------------UGGCGC---------------UGGgCCGCCACGcc -5'
1813 3' -65.2 NC_001347.2 + 19882 0.66 0.664952
Target:  5'- aCGGCGuGauGCUGUGAUgaCGGCGGUcucaacggccGCGGg -3'
miRNA:   3'- -GCCGC-C--UGGCGCUGg-GCCGCCA----------CGCC- -5'
1813 3' -65.2 NC_001347.2 + 89722 0.66 0.664952
Target:  5'- aCGGgguucCGGGCgGCgGugCUGGCGGggGUGGu -3'
miRNA:   3'- -GCC-----GCCUGgCG-CugGGCCGCCa-CGCC- -5'
1813 3' -65.2 NC_001347.2 + 77914 0.66 0.664952
Target:  5'- uGGUgGGGCUGCGucGCCugcgaCGGCGG-GUGGa -3'
miRNA:   3'- gCCG-CCUGGCGC--UGG-----GCCGCCaCGCC- -5'
1813 3' -65.2 NC_001347.2 + 94020 0.66 0.664036
Target:  5'- gGaGCGGuaauuuuccaccGCCGCGGCCCaugcccggcacggGGCucgcgcucccuaGGUGCGGc -3'
miRNA:   3'- gC-CGCC------------UGGCGCUGGG-------------CCG------------CCACGCC- -5'
1813 3' -65.2 NC_001347.2 + 199325 0.66 0.664036
Target:  5'- aCGaGCGGAgCGCGACCCauuucaaGGuCGGcGCa- -3'
miRNA:   3'- -GC-CGCCUgGCGCUGGG-------CC-GCCaCGcc -5'
1813 3' -65.2 NC_001347.2 + 57910 0.66 0.65579
Target:  5'- uGGCGG-CCGUGaACCUGaGCGuGUuuGUGGa -3'
miRNA:   3'- gCCGCCuGGCGC-UGGGC-CGC-CA--CGCC- -5'
1813 3' -65.2 NC_001347.2 + 74981 0.66 0.65579
Target:  5'- uGGUGGACgG-GGCCgGGCuGGU-CGGg -3'
miRNA:   3'- gCCGCCUGgCgCUGGgCCG-CCAcGCC- -5'
1813 3' -65.2 NC_001347.2 + 204247 0.66 0.65579
Target:  5'- -uGCGGAUaCGCcGCCgGGCGcUGCGGu -3'
miRNA:   3'- gcCGCCUG-GCGcUGGgCCGCcACGCC- -5'
1813 3' -65.2 NC_001347.2 + 34045 0.66 0.65579
Target:  5'- gCGGCauugaaGGACCucuacGCGGCCUuuuGCGaGUGCGGc -3'
miRNA:   3'- -GCCG------CCUGG-----CGCUGGGc--CGC-CACGCC- -5'
1813 3' -65.2 NC_001347.2 + 103392 0.66 0.65579
Target:  5'- aCGGCGG-CCGCaucgacggcacGcACCUGGCGG-GCu- -3'
miRNA:   3'- -GCCGCCuGGCG-----------C-UGGGCCGCCaCGcc -5'
1813 3' -65.2 NC_001347.2 + 94548 0.66 0.65579
Target:  5'- cCGG-GGuCCGCGACCCaGCcccccGUGgGGg -3'
miRNA:   3'- -GCCgCCuGGCGCUGGGcCGc----CACgCC- -5'
1813 3' -65.2 NC_001347.2 + 210143 0.66 0.646614
Target:  5'- uGGCcGucAUCGUGACCuCGGUGGUGUGc -3'
miRNA:   3'- gCCGcC--UGGCGCUGG-GCCGCCACGCc -5'
1813 3' -65.2 NC_001347.2 + 163359 0.66 0.637428
Target:  5'- gCGGCGGcaacgGgCGCGACaCCGGCGa--CGGa -3'
miRNA:   3'- -GCCGCC-----UgGCGCUG-GGCCGCcacGCC- -5'
1813 3' -65.2 NC_001347.2 + 48103 0.66 0.637428
Target:  5'- uGuGUGGGCCG-GcCCuCGG-GGUGCGGg -3'
miRNA:   3'- gC-CGCCUGGCgCuGG-GCCgCCACGCC- -5'
1813 3' -65.2 NC_001347.2 + 87735 0.66 0.636509
Target:  5'- cCGGCGaagacgaGGCUgGCGGCgUCGGCGGgagcaGCGGg -3'
miRNA:   3'- -GCCGC-------CUGG-CGCUG-GGCCGCCa----CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.