miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1813 5' -52.6 NC_001347.2 + 35937 0.65 0.994402
Target:  5'- -uCUGCGCgggcagcccaaguuCAGCAGCaucUGgcGCGGUCUGCg -3'
miRNA:   3'- uuGAUGCG--------------GUUGUUG---AC--UGCCAGGCG- -5'
1813 5' -52.6 NC_001347.2 + 215244 0.66 0.993814
Target:  5'- uGGCcACGCCGugGuaugugcuagGCgUGACGGgacgUCCGCg -3'
miRNA:   3'- -UUGaUGCGGUugU----------UG-ACUGCC----AGGCG- -5'
1813 5' -52.6 NC_001347.2 + 213427 0.66 0.993814
Target:  5'- aGGCUGCGUacaCAugGGCgaggcGGCGcGUCUGCa -3'
miRNA:   3'- -UUGAUGCG---GUugUUGa----CUGC-CAGGCG- -5'
1813 5' -52.6 NC_001347.2 + 191686 0.66 0.993814
Target:  5'- uACUGCGCCAGCucCUGccACGcGcCCaGCa -3'
miRNA:   3'- uUGAUGCGGUUGuuGAC--UGC-CaGG-CG- -5'
1813 5' -52.6 NC_001347.2 + 33520 0.66 0.993814
Target:  5'- uGCaACGUCGAgAACUGucGCGGUuUCGCa -3'
miRNA:   3'- uUGaUGCGGUUgUUGAC--UGCCA-GGCG- -5'
1813 5' -52.6 NC_001347.2 + 182005 0.66 0.993814
Target:  5'- uGGCUACGCUGAUAguccuGCUGGUGGUCUu- -3'
miRNA:   3'- -UUGAUGCGGUUGU-----UGACUGCCAGGcg -5'
1813 5' -52.6 NC_001347.2 + 152832 0.66 0.993814
Target:  5'- uGCUGCGCaAGCAGCUGcucuACGGagUGUg -3'
miRNA:   3'- uUGAUGCGgUUGUUGAC----UGCCagGCG- -5'
1813 5' -52.6 NC_001347.2 + 33192 0.66 0.993814
Target:  5'- cAACcACGCCAACcGCUGcCG--CCGCa -3'
miRNA:   3'- -UUGaUGCGGUUGuUGACuGCcaGGCG- -5'
1813 5' -52.6 NC_001347.2 + 105331 0.66 0.993726
Target:  5'- uGCgGCGCCGACuccuuguAGCgccGACGGUgagacCCGCg -3'
miRNA:   3'- uUGaUGCGGUUG-------UUGa--CUGCCA-----GGCG- -5'
1813 5' -52.6 NC_001347.2 + 119792 0.66 0.993456
Target:  5'- gGACUGCaccucuuucagaGCCAGCGGCgcGGCGGcgaagaaaaucggCCGCg -3'
miRNA:   3'- -UUGAUG------------CGGUUGUUGa-CUGCCa------------GGCG- -5'
1813 5' -52.6 NC_001347.2 + 34627 0.66 0.992887
Target:  5'- cGC-ACGcCCGAgGAuCUGGCGG-CCGCc -3'
miRNA:   3'- uUGaUGC-GGUUgUU-GACUGCCaGGCG- -5'
1813 5' -52.6 NC_001347.2 + 225642 0.66 0.992887
Target:  5'- ---aACGCCaAGCGAaggucccuCUGGCucGGUCCGCc -3'
miRNA:   3'- uugaUGCGG-UUGUU--------GACUG--CCAGGCG- -5'
1813 5' -52.6 NC_001347.2 + 115498 0.66 0.992887
Target:  5'- gAACguuCGCCGGCAcGCUGuccCGGcacCCGCa -3'
miRNA:   3'- -UUGau-GCGGUUGU-UGACu--GCCa--GGCG- -5'
1813 5' -52.6 NC_001347.2 + 38542 0.66 0.992887
Target:  5'- -cCUGCGCCGGCAgacgauaguccuGCucgggguccaugUGGCGGcacagCCGCa -3'
miRNA:   3'- uuGAUGCGGUUGU------------UG------------ACUGCCa----GGCG- -5'
1813 5' -52.6 NC_001347.2 + 21566 0.66 0.992789
Target:  5'- ---aGCGCCGugGucucggucgccagGCUGugGGUCuCGUu -3'
miRNA:   3'- uugaUGCGGUugU-------------UGACugCCAG-GCG- -5'
1813 5' -52.6 NC_001347.2 + 204911 0.66 0.992789
Target:  5'- ---gGCGCCGuggguugGCAGCUGGcCGGcuugaCCGCg -3'
miRNA:   3'- uugaUGCGGU-------UGUUGACU-GCCa----GGCG- -5'
1813 5' -52.6 NC_001347.2 + 37057 0.66 0.992281
Target:  5'- cGACUugGCCGaccugugcgugcgacGCGACUauGAgGGcCUGCg -3'
miRNA:   3'- -UUGAugCGGU---------------UGUUGA--CUgCCaGGCG- -5'
1813 5' -52.6 NC_001347.2 + 44363 0.66 0.991854
Target:  5'- aAGCgcgGCGguCCAGCAACUGaccGCGGaaacacugCCGCa -3'
miRNA:   3'- -UUGa--UGC--GGUUGUUGAC---UGCCa-------GGCG- -5'
1813 5' -52.6 NC_001347.2 + 140851 0.66 0.991854
Target:  5'- uAACgaugGgGCU-AUAACUcACGGUCCGCg -3'
miRNA:   3'- -UUGa---UgCGGuUGUUGAcUGCCAGGCG- -5'
1813 5' -52.6 NC_001347.2 + 87932 0.66 0.991854
Target:  5'- gGACgccgACGcCCAGCGAUUaACGGacgCCGCc -3'
miRNA:   3'- -UUGa---UGC-GGUUGUUGAcUGCCa--GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.