Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18134 | 3' | -57.9 | NC_004680.1 | + | 24548 | 0.69 | 0.446104 |
Target: 5'- -cCGCCGcaccGAUCAGUGUCACCCAgCAa -3' miRNA: 3'- gcGCGGCc---CUGGUUACAGUGGGU-GUc -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 24296 | 0.69 | 0.427249 |
Target: 5'- gGUGCCGGGAagGGUGgugccCAUCCACAu -3' miRNA: 3'- gCGCGGCCCUggUUACa----GUGGGUGUc -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 55843 | 0.69 | 0.418 |
Target: 5'- aGCGCCGcuuGGACUAGaagCAUCCACGGu -3' miRNA: 3'- gCGCGGC---CCUGGUUacaGUGGGUGUC- -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 14395 | 0.69 | 0.403459 |
Target: 5'- cCGCGCCGGGACCGucguacaaccggaacGUGcCAggaCCgaACAGg -3' miRNA: 3'- -GCGCGGCCCUGGU---------------UACaGUg--GG--UGUC- -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 3083 | 0.69 | 0.399874 |
Target: 5'- cCGCGCCGGGAgCGuuGUGggaguugCcCCCugGGg -3' miRNA: 3'- -GCGCGGCCCUgGU--UACa------GuGGGugUC- -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 44097 | 0.7 | 0.391001 |
Target: 5'- -aUGCCGGGAguauucgcCCGAUGagGCCCGCGa -3' miRNA: 3'- gcGCGGCCCU--------GGUUACagUGGGUGUc -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 12347 | 0.7 | 0.382258 |
Target: 5'- aGCGCCuugggcGGGCCAGUucGUCACCgACAc -3' miRNA: 3'- gCGCGGc-----CCUGGUUA--CAGUGGgUGUc -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 5446 | 0.7 | 0.373646 |
Target: 5'- gGUGUCGGuGGCCAgggccGUGgCACCCGCAc -3' miRNA: 3'- gCGCGGCC-CUGGU-----UACaGUGGGUGUc -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 43547 | 0.7 | 0.348609 |
Target: 5'- gGUGCCaGGACCGGUugUGCCCACAu -3' miRNA: 3'- gCGCGGcCCUGGUUAcaGUGGGUGUc -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 28382 | 0.71 | 0.317128 |
Target: 5'- uGCuGCUGGGuaGCCGAUGggUugCCACAGg -3' miRNA: 3'- gCG-CGGCCC--UGGUUACa-GugGGUGUC- -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 14256 | 0.73 | 0.241766 |
Target: 5'- cCGCaCCGGGGCUggUGUCGCCUg--- -3' miRNA: 3'- -GCGcGGCCCUGGuuACAGUGGGuguc -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 41417 | 0.73 | 0.241766 |
Target: 5'- gGCgagGCCGGGGCCGAUGaUGCCgGCGGc -3' miRNA: 3'- gCG---CGGCCCUGGUUACaGUGGgUGUC- -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 11251 | 0.74 | 0.207319 |
Target: 5'- aCGCGCCaGGAggcggcagaaUCGG-GUCACCCGCAGg -3' miRNA: 3'- -GCGCGGcCCU----------GGUUaCAGUGGGUGUC- -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 11169 | 0.75 | 0.186779 |
Target: 5'- gGCGCCGGGGCCGccaccaagGcCGCCCgGCAGc -3' miRNA: 3'- gCGCGGCCCUGGUua------CaGUGGG-UGUC- -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 8877 | 0.77 | 0.124967 |
Target: 5'- cCGCGCCGGGACgGGUcucCGCCgGCAGg -3' miRNA: 3'- -GCGCGGCCCUGgUUAca-GUGGgUGUC- -5' |
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18134 | 3' | -57.9 | NC_004680.1 | + | 38830 | 1.09 | 0.000606 |
Target: 5'- cCGCGCCGGGACCAAUGUCACCCACAGg -3' miRNA: 3'- -GCGCGGCCCUGGUUACAGUGGGUGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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