miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18134 5' -56.1 NC_004680.1 + 41412 0.66 0.706799
Target:  5'- ---gGCCGggGCCgaUGAUGC-CGGCGGc -3'
miRNA:   3'- cagaCGGCuuUGG--GCUACGgGCUGUC- -5'
18134 5' -56.1 NC_004680.1 + 45243 0.66 0.674539
Target:  5'- ---cGCCGAGACCaCGggGCCUGcgaugguguGCAGu -3'
miRNA:   3'- cagaCGGCUUUGG-GCuaCGGGC---------UGUC- -5'
18134 5' -56.1 NC_004680.1 + 14185 0.66 0.663693
Target:  5'- nGUCcggGCCGAGuucacuaCCGGUGCCgguuuccuugugCGACAGg -3'
miRNA:   3'- -CAGa--CGGCUUug-----GGCUACGG------------GCUGUC- -5'
18134 5' -56.1 NC_004680.1 + 1751 0.67 0.641923
Target:  5'- aUCUGCCG--GCCCGucgcaaucucaGUGaCCaCGACAGc -3'
miRNA:   3'- cAGACGGCuuUGGGC-----------UAC-GG-GCUGUC- -5'
18134 5' -56.1 NC_004680.1 + 29330 0.67 0.598356
Target:  5'- ---gGCCGGGAa-CG-UGCCCGACAGa -3'
miRNA:   3'- cagaCGGCUUUggGCuACGGGCUGUC- -5'
18134 5' -56.1 NC_004680.1 + 8791 0.68 0.555233
Target:  5'- -cCUGCCGGcggaGACCCGu--CCCGGCGc -3'
miRNA:   3'- caGACGGCU----UUGGGCuacGGGCUGUc -5'
18134 5' -56.1 NC_004680.1 + 23244 0.68 0.534001
Target:  5'- cGUC-GCCGGuguugguGCCCGuggaGCCCGACGu -3'
miRNA:   3'- -CAGaCGGCUu------UGGGCua--CGGGCUGUc -5'
18134 5' -56.1 NC_004680.1 + 54863 0.69 0.502722
Target:  5'- cGUCUGcCCGGAACCC--UGCUCGAa-- -3'
miRNA:   3'- -CAGAC-GGCUUUGGGcuACGGGCUguc -5'
18134 5' -56.1 NC_004680.1 + 31746 0.7 0.472269
Target:  5'- ---aGCCuGAAACCCGGugugccagUGCCgGACGGg -3'
miRNA:   3'- cagaCGG-CUUUGGGCU--------ACGGgCUGUC- -5'
18134 5' -56.1 NC_004680.1 + 12051 0.71 0.41435
Target:  5'- -cCUGCUGcaAAACCUGcUGCCCGAUGGc -3'
miRNA:   3'- caGACGGC--UUUGGGCuACGGGCUGUC- -5'
18134 5' -56.1 NC_004680.1 + 14212 0.73 0.320348
Target:  5'- -cCUGCauaccAAACCCGAUGcCCCGAUAGu -3'
miRNA:   3'- caGACGgc---UUUGGGCUAC-GGGCUGUC- -5'
18134 5' -56.1 NC_004680.1 + 8294 0.73 0.286059
Target:  5'- -gCUGCCGAAugaguacuucaugcgGCCCGA--CCCGGCGGg -3'
miRNA:   3'- caGACGGCUU---------------UGGGCUacGGGCUGUC- -5'
18134 5' -56.1 NC_004680.1 + 3213 0.76 0.192223
Target:  5'- -gCUGCCG-AugCUGAUGCCgGACAGc -3'
miRNA:   3'- caGACGGCuUugGGCUACGGgCUGUC- -5'
18134 5' -56.1 NC_004680.1 + 38791 1.09 0.000913
Target:  5'- aGUCUGCCGAAACCCGAUGCCCGACAGa -3'
miRNA:   3'- -CAGACGGCUUUGGGCUACGGGCUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.