miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18137 5' -56.3 NC_004680.1 + 4324 0.66 0.666839
Target:  5'- aCGAUCAacuuccgGUAGUcaacGGCG-CGUCCGCCGc -3'
miRNA:   3'- -GCUAGU-------CGUCG----CCGUaGCAGGUGGUu -5'
18137 5' -56.3 NC_004680.1 + 47705 0.66 0.656954
Target:  5'- cCGAUCauGGgAGCGGguUuCGUCCguuGCCGAa -3'
miRNA:   3'- -GCUAG--UCgUCGCCguA-GCAGG---UGGUU- -5'
18137 5' -56.3 NC_004680.1 + 9076 0.66 0.634931
Target:  5'- uGAUCuGCGGCGGUuuuUCGggcugagcgUCGCCGAu -3'
miRNA:   3'- gCUAGuCGUCGCCGu--AGCa--------GGUGGUU- -5'
18137 5' -56.3 NC_004680.1 + 28423 0.66 0.62391
Target:  5'- uCGGUgaUAGCAGCGGCAauggauUUGcCCAUCGGg -3'
miRNA:   3'- -GCUA--GUCGUCGCCGU------AGCaGGUGGUU- -5'
18137 5' -56.3 NC_004680.1 + 16083 0.66 0.612897
Target:  5'- uCGAUCAGCcaugcgaaGGUGGCAuucaucaagUCGUUCAaCCAc -3'
miRNA:   3'- -GCUAGUCG--------UCGCCGU---------AGCAGGU-GGUu -5'
18137 5' -56.3 NC_004680.1 + 43648 0.67 0.601901
Target:  5'- uCGAUauucggAGCAGCGGCAgCGUUC-CCGg -3'
miRNA:   3'- -GCUAg-----UCGUCGCCGUaGCAGGuGGUu -5'
18137 5' -56.3 NC_004680.1 + 26792 0.67 0.569103
Target:  5'- aGGUCGGCAcCGGCAUCGgcgaugaCCGCa-- -3'
miRNA:   3'- gCUAGUCGUcGCCGUAGCa------GGUGguu -5'
18137 5' -56.3 NC_004680.1 + 54977 0.67 0.569103
Target:  5'- aCGAUCGGUGGCGGgucggaaugaaaCGUCGggCgGCCAGg -3'
miRNA:   3'- -GCUAGUCGUCGCC------------GUAGCa-GgUGGUU- -5'
18137 5' -56.3 NC_004680.1 + 28342 0.67 0.557181
Target:  5'- uCGA-CGGCgcgGGCGGUGUCGgcgucggggccgaUCCACCAGg -3'
miRNA:   3'- -GCUaGUCG---UCGCCGUAGC-------------AGGUGGUU- -5'
18137 5' -56.3 NC_004680.1 + 11368 0.68 0.50509
Target:  5'- aCGAuUCAGCGGagaacaCGGCAgCGUCCugCGg -3'
miRNA:   3'- -GCU-AGUCGUC------GCCGUaGCAGGugGUu -5'
18137 5' -56.3 NC_004680.1 + 7362 0.68 0.50509
Target:  5'- cCGGUCGGCGGUGGUGUUGUUgCGCg-- -3'
miRNA:   3'- -GCUAGUCGUCGCCGUAGCAG-GUGguu -5'
18137 5' -56.3 NC_004680.1 + 25817 0.68 0.494708
Target:  5'- gCGuUCGGCAcuGCGGCggCGgccgCCACCAc -3'
miRNA:   3'- -GCuAGUCGU--CGCCGuaGCa---GGUGGUu -5'
18137 5' -56.3 NC_004680.1 + 3986 0.68 0.494708
Target:  5'- aGGUCGuguucacccGCAGCGGCGUCcaguUCUACCGc -3'
miRNA:   3'- gCUAGU---------CGUCGCCGUAGc---AGGUGGUu -5'
18137 5' -56.3 NC_004680.1 + 5496 0.69 0.454215
Target:  5'- cCGGUaAGC-GCGGUuccGUUGUCCACCAGc -3'
miRNA:   3'- -GCUAgUCGuCGCCG---UAGCAGGUGGUU- -5'
18137 5' -56.3 NC_004680.1 + 16793 0.71 0.344708
Target:  5'- cCGAcacCGGCGGaaGCGUCGUUCACCGAg -3'
miRNA:   3'- -GCUa--GUCGUCgcCGUAGCAGGUGGUU- -5'
18137 5' -56.3 NC_004680.1 + 27266 0.72 0.328401
Target:  5'- gGAaggCGGCGGCGGCGaCGcugCCGCCGAg -3'
miRNA:   3'- gCUa--GUCGUCGCCGUaGCa--GGUGGUU- -5'
18137 5' -56.3 NC_004680.1 + 27363 0.72 0.31267
Target:  5'- gCGAgguucUCGGCGGCaGCGUCG-CCGCCGc -3'
miRNA:   3'- -GCU-----AGUCGUCGcCGUAGCaGGUGGUu -5'
18137 5' -56.3 NC_004680.1 + 52941 0.79 0.116404
Target:  5'- ---aUAGCGGCGGCAuucUCGUCCGCCGc -3'
miRNA:   3'- gcuaGUCGUCGCCGU---AGCAGGUGGUu -5'
18137 5' -56.3 NC_004680.1 + 41389 1.06 0.001226
Target:  5'- gCGAUCAGCAGCGGCAUCGUCCACCAAu -3'
miRNA:   3'- -GCUAGUCGUCGCCGUAGCAGGUGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.