miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1814 3' -59.9 NC_001347.2 + 69333 0.66 0.874788
Target:  5'- cCGCCGCUacagCGGcGCCGCcaugCCaGgGGCCg -3'
miRNA:   3'- cGCGGUGA----GCC-UGGCGa---GGaCgCUGG- -5'
1814 3' -59.9 NC_001347.2 + 111290 0.66 0.874788
Target:  5'- aGCGCCACaccCGGGugcCCcUUCCUGgGAUCc -3'
miRNA:   3'- -CGCGGUGa--GCCU---GGcGAGGACgCUGG- -5'
1814 3' -59.9 NC_001347.2 + 192300 0.66 0.874788
Target:  5'- cGCGguCCAgCUCGGGCagcaGCcgCCgcGCGGCCu -3'
miRNA:   3'- -CGC--GGU-GAGCCUGg---CGa-GGa-CGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 33126 0.66 0.874788
Target:  5'- gGgGCC-CUCGGugCGCUaCCg--GGCCc -3'
miRNA:   3'- -CgCGGuGAGCCugGCGA-GGacgCUGG- -5'
1814 3' -59.9 NC_001347.2 + 56050 0.66 0.874788
Target:  5'- gGCGuucggacgaccuCCGCgUCGGucGCCGcCUCC-GCGGCCc -3'
miRNA:   3'- -CGC------------GGUG-AGCC--UGGC-GAGGaCGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 32669 0.66 0.874788
Target:  5'- cGCGCCgccgACUCGcuGCCGCagCUgcuggagcGCGGCCu -3'
miRNA:   3'- -CGCGG----UGAGCc-UGGCGagGA--------CGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 37061 0.66 0.874788
Target:  5'- cGCGCgACUUGG-CCGaccugugCgUGCGACg -3'
miRNA:   3'- -CGCGgUGAGCCuGGCga-----GgACGCUGg -5'
1814 3' -59.9 NC_001347.2 + 116569 0.66 0.874788
Target:  5'- cGCGCgaaaccaGCUCGGACUuuUCCgaagcGCGGCg -3'
miRNA:   3'- -CGCGg------UGAGCCUGGcgAGGa----CGCUGg -5'
1814 3' -59.9 NC_001347.2 + 126961 0.66 0.867906
Target:  5'- cCGCCAUgaccaacaACCGggCCUGCGGCCu -3'
miRNA:   3'- cGCGGUGagcc----UGGCgaGGACGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 125965 0.66 0.867906
Target:  5'- cCGgCACgacgaggUGGACCGCuggaUCCggcacGCGGCCg -3'
miRNA:   3'- cGCgGUGa------GCCUGGCG----AGGa----CGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 112438 0.66 0.867906
Target:  5'- gGCgGCCGCUgacgCGGcgACCGCgUCagacgggGCGACCa -3'
miRNA:   3'- -CG-CGGUGA----GCC--UGGCG-AGga-----CGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 90114 0.66 0.867906
Target:  5'- cGCGCCGCUCaaGGACgaaCGCUa-UG-GGCCg -3'
miRNA:   3'- -CGCGGUGAG--CCUG---GCGAggACgCUGG- -5'
1814 3' -59.9 NC_001347.2 + 165520 0.66 0.861553
Target:  5'- cCGCCGCcCGGAUUGCggcuucucuuucucaCCUG-GACCg -3'
miRNA:   3'- cGCGGUGaGCCUGGCGa--------------GGACgCUGG- -5'
1814 3' -59.9 NC_001347.2 + 94128 0.66 0.860838
Target:  5'- gGCGCaGCgugCGGACCGCagCa-CGGCCg -3'
miRNA:   3'- -CGCGgUGa--GCCUGGCGagGacGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 119821 0.66 0.860838
Target:  5'- cGCuGCCGCU-GGACCGCgugcCCguuaGCgGACUg -3'
miRNA:   3'- -CG-CGGUGAgCCUGGCGa---GGa---CG-CUGG- -5'
1814 3' -59.9 NC_001347.2 + 121976 0.66 0.860838
Target:  5'- uGCuGCCGCaCGaGACgCGaCUCCUGCaGACg -3'
miRNA:   3'- -CG-CGGUGaGC-CUG-GC-GAGGACG-CUGg -5'
1814 3' -59.9 NC_001347.2 + 103170 0.66 0.853588
Target:  5'- aGC-CCGCgcuGGcACCGCUgCUggaGCGACCg -3'
miRNA:   3'- -CGcGGUGag-CC-UGGCGAgGA---CGCUGG- -5'
1814 3' -59.9 NC_001347.2 + 29611 0.66 0.853588
Target:  5'- aGCGCUACUUucGcCCGCUgUUGCGcGCCu -3'
miRNA:   3'- -CGCGGUGAGc-CuGGCGAgGACGC-UGG- -5'
1814 3' -59.9 NC_001347.2 + 228444 0.66 0.853588
Target:  5'- gGCGCCGCacccCGcG-UCGCUgCUGaCGGCCg -3'
miRNA:   3'- -CGCGGUGa---GC-CuGGCGAgGAC-GCUGG- -5'
1814 3' -59.9 NC_001347.2 + 33255 0.66 0.846162
Target:  5'- cGCGCCGCa-GGAUCGCac--GCGGCUg -3'
miRNA:   3'- -CGCGGUGagCCUGGCGaggaCGCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.