Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1814 | 3' | -59.9 | NC_001347.2 | + | 33255 | 0.66 | 0.846162 |
Target: 5'- cGCGCCGCa-GGAUCGCac--GCGGCUg -3' miRNA: 3'- -CGCGGUGagCCUGGCGaggaCGCUGG- -5' |
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1814 | 3' | -59.9 | NC_001347.2 | + | 165520 | 0.66 | 0.861553 |
Target: 5'- cCGCCGCcCGGAUUGCggcuucucuuucucaCCUG-GACCg -3' miRNA: 3'- cGCGGUGaGCCUGGCGa--------------GGACgCUGG- -5' |
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1814 | 3' | -59.9 | NC_001347.2 | + | 121976 | 0.66 | 0.860838 |
Target: 5'- uGCuGCCGCaCGaGACgCGaCUCCUGCaGACg -3' miRNA: 3'- -CG-CGGUGaGC-CUG-GC-GAGGACG-CUGg -5' |
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1814 | 3' | -59.9 | NC_001347.2 | + | 119821 | 0.66 | 0.860838 |
Target: 5'- cGCuGCCGCU-GGACCGCgugcCCguuaGCgGACUg -3' miRNA: 3'- -CG-CGGUGAgCCUGGCGa---GGa---CG-CUGG- -5' |
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1814 | 3' | -59.9 | NC_001347.2 | + | 94128 | 0.66 | 0.860838 |
Target: 5'- gGCGCaGCgugCGGACCGCagCa-CGGCCg -3' miRNA: 3'- -CGCGgUGa--GCCUGGCGagGacGCUGG- -5' |
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1814 | 3' | -59.9 | NC_001347.2 | + | 103170 | 0.66 | 0.853588 |
Target: 5'- aGC-CCGCgcuGGcACCGCUgCUggaGCGACCg -3' miRNA: 3'- -CGcGGUGag-CC-UGGCGAgGA---CGCUGG- -5' |
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1814 | 3' | -59.9 | NC_001347.2 | + | 29611 | 0.66 | 0.853588 |
Target: 5'- aGCGCUACUUucGcCCGCUgUUGCGcGCCu -3' miRNA: 3'- -CGCGGUGAGc-CuGGCGAgGACGC-UGG- -5' |
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1814 | 3' | -59.9 | NC_001347.2 | + | 228444 | 0.66 | 0.853588 |
Target: 5'- gGCGCCGCacccCGcG-UCGCUgCUGaCGGCCg -3' miRNA: 3'- -CGCGGUGa---GC-CuGGCGAgGAC-GCUGG- -5' |
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1814 | 3' | -59.9 | NC_001347.2 | + | 4053 | 0.66 | 0.846162 |
Target: 5'- cGCGCCugUCGcGAUC-CUCaugGCGAggaCCg -3' miRNA: 3'- -CGCGGugAGC-CUGGcGAGga-CGCU---GG- -5' |
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1814 | 3' | -59.9 | NC_001347.2 | + | 126961 | 0.66 | 0.867906 |
Target: 5'- cCGCCAUgaccaacaACCGggCCUGCGGCCu -3' miRNA: 3'- cGCGGUGagcc----UGGCgaGGACGCUGG- -5' |
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1814 | 3' | -59.9 | NC_001347.2 | + | 125965 | 0.66 | 0.867906 |
Target: 5'- cCGgCACgacgaggUGGACCGCuggaUCCggcacGCGGCCg -3' miRNA: 3'- cGCgGUGa------GCCUGGCG----AGGa----CGCUGG- -5' |
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1814 | 3' | -59.9 | NC_001347.2 | + | 112438 | 0.66 | 0.867906 |
Target: 5'- gGCgGCCGCUgacgCGGcgACCGCgUCagacgggGCGACCa -3' miRNA: 3'- -CG-CGGUGA----GCC--UGGCG-AGga-----CGCUGG- -5' |
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1814 | 3' | -59.9 | NC_001347.2 | + | 116569 | 0.66 | 0.874788 |
Target: 5'- cGCGCgaaaccaGCUCGGACUuuUCCgaagcGCGGCg -3' miRNA: 3'- -CGCGg------UGAGCCUGGcgAGGa----CGCUGg -5' |
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1814 | 3' | -59.9 | NC_001347.2 | + | 37061 | 0.66 | 0.874788 |
Target: 5'- cGCGCgACUUGG-CCGaccugugCgUGCGACg -3' miRNA: 3'- -CGCGgUGAGCCuGGCga-----GgACGCUGg -5' |
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1814 | 3' | -59.9 | NC_001347.2 | + | 32669 | 0.66 | 0.874788 |
Target: 5'- cGCGCCgccgACUCGcuGCCGCagCUgcuggagcGCGGCCu -3' miRNA: 3'- -CGCGG----UGAGCc-UGGCGagGA--------CGCUGG- -5' |
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1814 | 3' | -59.9 | NC_001347.2 | + | 56050 | 0.66 | 0.874788 |
Target: 5'- gGCGuucggacgaccuCCGCgUCGGucGCCGcCUCC-GCGGCCc -3' miRNA: 3'- -CGC------------GGUG-AGCC--UGGC-GAGGaCGCUGG- -5' |
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1814 | 3' | -59.9 | NC_001347.2 | + | 33126 | 0.66 | 0.874788 |
Target: 5'- gGgGCC-CUCGGugCGCUaCCg--GGCCc -3' miRNA: 3'- -CgCGGuGAGCCugGCGA-GGacgCUGG- -5' |
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1814 | 3' | -59.9 | NC_001347.2 | + | 192300 | 0.66 | 0.874788 |
Target: 5'- cGCGguCCAgCUCGGGCagcaGCcgCCgcGCGGCCu -3' miRNA: 3'- -CGC--GGU-GAGCCUGg---CGa-GGa-CGCUGG- -5' |
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1814 | 3' | -59.9 | NC_001347.2 | + | 90114 | 0.66 | 0.867906 |
Target: 5'- cGCGCCGCUCaaGGACgaaCGCUa-UG-GGCCg -3' miRNA: 3'- -CGCGGUGAG--CCUG---GCGAggACgCUGG- -5' |
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1814 | 3' | -59.9 | NC_001347.2 | + | 111290 | 0.66 | 0.874788 |
Target: 5'- aGCGCCACaccCGGGugcCCcUUCCUGgGAUCc -3' miRNA: 3'- -CGCGGUGa--GCCU---GGcGAGGACgCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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